FC931884

Overview
NameFC931884
Unique NameFC931884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.922e-31
Identity = 70/184 (38.04%), Postives = 96/184 (52.17%), Query Frame = 2
Query:  104 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP---NYPCRG--KYYGRGPIQLSWNYNY 640
            +A NCG    C    CCS+FG+CG T +YC +GCQS      C       G+ G G  +  +++   F  + + +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC    KYYGRGP+Q+SWNYNY
Sbjct:   19 AAQNCG----CQPNVCCSKFGYCGTTDEYCGDGCQSG----PCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY 179          

HSP 2 Score: 26.9498 bits (58), Expect = 1.922e-31
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  688 PDPSATDPVLSFKVSIWFW 744
            P   A D V++FK ++WFW
Sbjct:  194 PGRVARDAVVAFKAALWFW 212          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.533e-31
Identity = 63/121 (52.07%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  278 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 640
            +G I++  +F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF RE     +            YYGRGPIQL+   NY
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-----------YYGRGPIQLTGQSNY 134          

HSP 2 Score: 34.2686 bits (77), Expect = 5.533e-31
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +V +PD  ATD  +SFK +IWFW
Sbjct:  145 LVNNPDLVATDATVSFKTAIWFW 167          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 9.320e-31
Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  116 CGSGV---VCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC-DPNYPCRG--KYYGRGPIQLSWNYNY 640
            CG+ V    C    CCS  GWCG   DYC    CQ  C+  V G      G +        +++  +F+ +  +R D  CP++ FY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C         +D+C   ++PC    KY  RGPIQL+ N+NY
Sbjct:   72 CGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY 250          

HSP 2 Score: 34.2686 bits (77), Expect = 9.320e-31
Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++++PD    DP++SFK ++WFW
Sbjct:  261 LIQNPDLVEKDPIISFKTALWFW 283          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.220e-30
Identity = 71/184 (38.59%), Postives = 100/184 (54.35%), Query Frame = 2
Query:  104 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD---PNYPC-RGK-YYGRGPIQLSWNYNY 640
            +A +CG    C   +CCS++G+CG  +DYC  GCQ+           P D  A +   +  I++ + F  L+   +D  C A+ FYT DAF+ AA  +P+FG +G+    KREIAAFFA   HET               +C+  E+   S +YCD     +PC  GK YYGRGP+Q+SWN+NY
Sbjct:   24 AAQSCG----CASDQCCSKWGFCGTGSDYCGTGCQAG----------PCDVPATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY 179          

HSP 2 Score: 29.261 bits (64), Expect = 1.220e-30
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  688 PDPSATDPVLSFKVSIWFW 744
            PD  A  PVL+F+ ++W+W
Sbjct:  194 PDAVARSPVLAFQTALWYW 212          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.222e-30
Identity = 62/121 (51.24%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  278 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 640
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQL+   NY
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNQNNY 133          

HSP 2 Score: 34.6538 bits (78), Expect = 1.222e-30
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +V +PD  ATD  +SFK +IWFW
Sbjct:  144 LVNNPDLVATDATISFKTAIWFW 166          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 3.505e-30
Identity = 69/189 (36.51%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  104 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLSWNYNY 640
            +A NCG    C  G CCS++G+CG T  YC +GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q+SWN+NY
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY 195          

HSP 2 Score: 33.113 bits (74), Expect = 3.505e-30
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  688 PDPSATDPVLSFKVSIWFW 744
            PD  A DP +SFK ++WFW
Sbjct:  210 PDKVAQDPTISFKTALWFW 228          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.514e-30
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  278 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 640
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQL+   NY
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNRNNY 133          

HSP 2 Score: 34.6538 bits (78), Expect = 3.514e-30
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +V +PD  ATD  +SFK +IWFW
Sbjct:  144 LVNNPDLVATDATISFKTAIWFW 166          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.563e-30
Identity = 71/188 (37.77%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  104 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLSWNYNY 640
            SA NCG    C    CCS++G+CG   DYC +GC+S  C     G      G  G GG  G   + +  + F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                C+  E+  AS DYCD N   +PC+   KYYGRGP+Q+SWNYNY
Sbjct:   28 SAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY 198          

HSP 2 Score: 32.7278 bits (73), Expect = 4.563e-30
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  688 PDPSATDPVLSFKVSIWFW 744
            PD  A DP +SFK ++WFW
Sbjct:  213 PDRVAQDPTISFKTALWFW 231          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.572e-30
Identity = 62/130 (47.69%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  254 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 640
            G A  G  +G +I++ +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG       ++ WGYCF  E+  A+S            YYGRGPIQL+   NY
Sbjct:   26 GAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP----------PYYGRGPIQLTGQSNY 142          

HSP 2 Score: 33.8834 bits (76), Expect = 4.572e-30
Identity = 13/23 (56.52%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +V +PD  +TD V+SFK +IWFW
Sbjct:  153 LVGNPDLVSTDAVVSFKTAIWFW 175          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.312e-29
Identity = 72/185 (38.92%), Postives = 93/185 (50.27%), Query Frame = 2
Query:  104 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYNY 640
            +A NCG    C    CCS+FG+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYYGRGP+Q+SWNYNY
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY 190          

HSP 2 Score: 28.1054 bits (61), Expect = 1.312e-29
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  688 PDPSATDPVLSFKVSIWFW 744
            P+  A D V++FK ++WFW
Sbjct:  205 PNRVAQDAVIAFKTALWFW 223          
The following BLAST results are available for this feature:
BLAST of FC931884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_MAIZE1.922e-3138.04Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIT_PETHY5.533e-3152.07Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
AGI_URTDI9.320e-3136.81Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ1.220e-3038.59Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_TOBAC1.222e-3051.24Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI4_ORYSJ3.505e-3036.51Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC3.514e-3050.41Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI5_ORYSJ4.563e-3037.77Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI8_ORYSJ4.572e-3047.69Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE1.312e-2938.92Endochitinase A OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34202C02EF PostHarveN Citrus clementina cDNA clone C34202C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931884 ID=FC931884; Name=FC931884; organism=Citrus clementina; type=EST; length=744bp
GACACAAGCAGAGGATAATTCATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGA
GGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTG
TTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAG
GCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGAC
GACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAA
GATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCA
GATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGC
CTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCAC
CTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCT
GCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTA
TGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTGCG
GAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACATCCAGACCCTTCTG
CTACTGATCCAGTACTATCATTCAAAGTCAGCATCTGGTTCTGG
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