FC931884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29 Identity = 78/186 (41.94%), Postives = 95/186 (51.08%), Query Frame = 2 Query: 113 NCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGD--GGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRC 649 NCG C CCS+FG+CG T YC GC+S G C GT GG +G I+++ F ++ C + FYT D+FI AA FP F NS + +REIA FA HET +C+ E+ AS DYCD N YPC GK Y+GRGPIQLSWNYNY C Sbjct: 26 NCG----CAPNLCCSQFGYCGSTDAYCGTGCRS-------GPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC 182
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.281e-28 Identity = 71/185 (38.38%), Postives = 91/185 (49.19%), Query Frame = 2 Query: 104 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLSWNYNY 640 SA NCG C G CCS++G+CG DYC GCQ Q C P + I++ +++ + D C + FYT DAF+ A ++ FG G+E KREIAA FA HET +C+ E+ AS DYCD YPC Y+GRGPIQLSWN+NY Sbjct: 22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY 180 HSP 2 Score: 27.335 bits (59), Expect = 5.281e-28 Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 1 Query: 688 PDPSATDPVLSFKVSIWFW 744 P+ + D V+SFK ++W+W Sbjct: 195 PETVSNDVVVSFKTALWYW 213
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 6.888e-28 Identity = 66/170 (38.82%), Postives = 88/170 (51.76%), Query Frame = 2 Query: 149 CCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLSWNYNYL 643 CCS+ G+CG + DYC GCQ+ G C DP +G DG I + F D + + CP + FYT F+EA A+P FG + RKREIAA+FA HET C+ E +++YC + YPC +Y+GRGP+QLSWNYNY+ Sbjct: 11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYI 157 HSP 2 Score: 33.113 bits (74), Expect = 6.888e-28 Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 1 Query: 688 PDPSATDPVLSFKVSIWFW 744 PD DP++SFK S+WFW Sbjct: 171 PDIVGRDPIISFKTSLWFW 189
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 8.939e-28 Identity = 77/195 (39.49%), Postives = 90/195 (46.15%), Query Frame = 2 Query: 107 AGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLSWNYNY 640 A NCG C CCS FG+CG T YC G NC C P GT G G + I+S+ F+ ++ + CP + FYT AF+ A P FGN G+ KREIAAFFA HETT C E G YCD + YPC KYYGRGP+QLSWNYNY Sbjct: 27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY 198 HSP 2 Score: 28.1054 bits (61), Expect = 8.939e-28 Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1 Query: 685 HPDPSATDPVLSFKVSIWFW 744 +P+ ATD SFK ++WFW Sbjct: 212 NPEKVATDVNTSFKAAMWFW 231
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.618e-26 Identity = 59/121 (48.76%), Postives = 74/121 (61.16%), Query Frame = 2 Query: 278 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 640 + +IS +FE +L +R FYTYDAFI AAK+FPAF +G+ +RKRE+AAF AQT HETTGGWP AP G Y E+G+ S Y+GRGPIQ+S+NYNY Sbjct: 1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNYNY 93 HSP 2 Score: 27.335 bits (59), Expect = 3.618e-26 Identity = 8/23 (34.78%), Postives = 15/23 (65.22%), Query Frame = 1 Query: 676 VVEHPDPSATDPVLSFKVSIWFW 744 ++ +PD +D + FK ++WFW Sbjct: 104 LLRNPDLVTSDNTVEFKTALWFW 126
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.638e-23 Identity = 57/105 (54.29%), Postives = 66/105 (62.86%), Query Frame = 2 Query: 101 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 397 GSA CG +CPGG CCS +GWCG T DYC +GCQS C+ G+ CD G GDG G L II + F+ LL++RND RC A FYTYDAFI AAK F Sbjct: 20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121 The following BLAST results are available for this feature:
BLAST of FC931884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931884 ID=FC931884; Name=FC931884; organism=Citrus clementina; type=EST; length=744bpback to top |