FC931887 | Citrus Genome Database

Overview


Name	FC931887
Unique Name	FC931887
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	687

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HSP83_ANOGA (Heat shock protein 83 OS=Anopheles gambiae GN=Hsp83 PE=3 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 6.000e-66
Identity = 94/117 (80.34%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKL++  ELFI+I+P+K    L++ID+G+GMTKADLVNNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    6 EGETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLESGKELFIKIIPNKEAGTLTLIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIG 122

HSP 2 Score: 87.8113 bits (216), Expect = 6.000e-66
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVA+KV+VT+K+NDDEQYVWES AGGSFTV  D SGEPL
Sbjct:  121 IGQFGVGFYSAYLVADKVVVTSKNNDDEQYVWESSAGGSFTVRPD-SGEPL 170

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.020e-65
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I ++P+K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 132

HSP 2 Score: 86.2705 bits (212), Expect = 1.020e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  131 IGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 180

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.020e-65
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I ++P+K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 132

HSP 2 Score: 86.2705 bits (212), Expect = 1.020e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  131 IGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 180

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.020e-65
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I ++P+K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 132

HSP 2 Score: 86.2705 bits (212), Expect = 1.020e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  131 IGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 180

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.020e-65
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I ++P+K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 132

HSP 2 Score: 86.2705 bits (212), Expect = 1.020e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  131 IGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 180

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 185.652 bits (470), Expect = 1.020e-65
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I ++P+K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 132

HSP 2 Score: 86.2705 bits (212), Expect = 1.020e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  131 IGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 180

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.020e-65
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I ++P+K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 132

HSP 2 Score: 86.2705 bits (212), Expect = 1.020e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  131 IGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 180

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_HORSE (Heat shock protein HSP 90-alpha (Fragment) OS=Equus caballus GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.020e-65
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I ++P+K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    5 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 121

HSP 2 Score: 86.2705 bits (212), Expect = 1.020e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  120 IGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 169

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_CRIGR (Heat shock protein HSP 90-alpha OS=Cricetulus griseus GN=HSP90AA1 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.330e-65
Identity = 93/117 (79.49%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I I+P+K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINIIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 132

HSP 2 Score: 85.1149 bits (209), Expect = 1.330e-65
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFY+AYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  131 IGQFGVGFYTAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 180

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 185.267 bits (469), Expect = 1.330e-65
Identity = 92/117 (78.63%), Postives = 106/117 (90.60%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I ++P K ++ L+I+D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 132

HSP 2 Score: 86.2705 bits (212), Expect = 1.330e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEP+
Sbjct:  131 IGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD-TGEPM 180

The following BLAST results are available for this feature:

BLAST of FC931887 vs. ExPASy Swiss-Prot

BLAST of FC931887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378


Match Name	E-value	Identity	Description
HSP83_ANOGA	6.000e-66	80.34	Heat shock protein 83 OS=Anopheles gambiae GN=Hsp8...	[more]
HS90A_RAT	1.020e-65	78.63	Heat shock protein HSP 90-alpha OS=Rattus norvegic...	[more]
HS90A_PIG	1.020e-65	78.63	Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H...	[more]
HS90A_PANTR	1.020e-65	78.63	Heat shock protein HSP 90-alpha OS=Pan troglodytes...	[more]
HS90A_MACFA	1.020e-65	78.63	Heat shock protein HSP 90-alpha OS=Macaca fascicul...	[more]
HS90A_HUMAN	1.020e-65	78.63	Heat shock protein HSP 90-alpha OS=Homo sapiens GN...	[more]
HS90A_BOVIN	1.020e-65	78.63	Heat shock protein HSP 90-alpha OS=Bos taurus GN=H...	[more]
HS90A_HORSE	1.020e-65	78.63	Heat shock protein HSP 90-alpha (Fragment) OS=Equu...	[more]
HS90A_CRIGR	1.330e-65	79.49	Heat shock protein HSP 90-alpha OS=Cricetulus gris...	[more]
HS90A_MOUSE	1.330e-65	78.63	Heat shock protein HSP 90-alpha OS=Mus musculus GN...	[more]

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Properties


Property Name	Value
Genbank description	C34202C05EF PostHarveN Citrus clementina cDNA clone C34202C05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931887 ID=FC931887; Name=FC931887; organism=Citrus clementina; type=EST; length=687bp
GATCGTCAAGTAGAAGCACTGTCTTGAGTTTTCCAATAGAAATCATCAAA
TCAGTTCGTACTCCTACTTCTTCAGCAAACAGCAAACGGCATTTGTATTC
GCTCGTTTTCGTTTTGCTCTGTTTCTTTTTGAACGTTTGGAGTTTTTGAG
TCTGGTCGGGAAACAATGGCTGACGTGCACATGGGAGAAACCGAGACCTT
CGCTTTTCAGGCTGAGATTAATCAGCTTTTAAGCTTGATCATCAATACTT
TTTACAGCAACAAAGAGATTTTCCTTCGTGAACTCATCAGCAACTCCTCT
GATGCGCTTGATAAGATCAGATTTGAGAGCTTAACCGACAAGAGCAAGCT
CGATGCTCAGCCAGAGCTTTTCATCAGAATTGTTCCTGACAAAGCCAACA
AGGCACTATCAATCATCGATAGCGGCGTTGGCATGACCAAAGCAGATTTG
GTGAATAACTTGGGAACAATTGCGAGGTCCGGAACAAAGGAGTTTATGGA
GGCATTACAGGCGGGTGCTGACGTAAGCATGATTGGGGCAGTTTGGTGTC
GGGTTCTACTCTGCTTATTTGGTGGCGGAGAAGGTTATTGTGACGACTAA
ACACAATGATGATGAACAATACGTTTGGGAGTCGCAGGCCGGTGGATCTT
TCACTGTTACTAGAGATGTTAGCGGTGAGCCTCTGGG