FC931887 | Citrus Genome Database

Overview


Name	FC931887
Unique Name	FC931887
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	687

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 5.015e-65
Identity = 94/124 (75.81%), Postives = 109/124 (87.90%), Query Frame = 1

Query:  172 DVHMGE--TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            +VH GE   ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+   + L+++D+G+GMTKADLVNNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIG 127

HSP 2 Score: 87.0409 bits (214), Expect = 5.015e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV+V TKHNDDEQY WES AGGSFTV  D  GEP+
Sbjct:  126 IGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPI 175

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 182.185 bits (461), Expect = 6.540e-65
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1

Query:  172 DVHMGE--TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            +VH GE   ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+   + L+++D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 127

HSP 2 Score: 87.0409 bits (214), Expect = 6.540e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV+V TKHNDDEQY WES AGGSFTV  D  GEP+
Sbjct:  126 IGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPI 175

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 6.540e-65
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1

Query:  172 DVHMGE--TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            +VH GE   ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+   + L+++D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 127

HSP 2 Score: 87.0409 bits (214), Expect = 6.540e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV+V TKHNDDEQY WES AGGSFTV  D  GEP+
Sbjct:  126 IGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPI 175

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 6.540e-65
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1

Query:  172 DVHMGE--TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            +VH GE   ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+   + L+++D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 127

HSP 2 Score: 87.0409 bits (214), Expect = 6.540e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV+V TKHNDDEQY WES AGGSFTV  D  GEP+
Sbjct:  126 IGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPI 175

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 182.185 bits (461), Expect = 6.540e-65
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1

Query:  172 DVHMGE--TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            +VH GE   ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+   + L+++D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 127

HSP 2 Score: 87.0409 bits (214), Expect = 6.540e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV+V TKHNDDEQY WES AGGSFTV  D  GEP+
Sbjct:  126 IGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPI 175

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 6.540e-65
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1

Query:  172 DVHMGE--TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            +VH GE   ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+   + L+++D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 127

HSP 2 Score: 87.0409 bits (214), Expect = 6.540e-65
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV+V TKHNDDEQY WES AGGSFTV  D  GEP+
Sbjct:  126 IGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPI 175

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.112e-64
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1

Query:  172 DVHMGE--TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            +VH GE   ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+   + L+++D+G+GMTKADL+NNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDILPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIG 127

HSP 2 Score: 87.0409 bits (214), Expect = 1.112e-64
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV+V TKHNDDEQY WES AGGSFTV  D  GEP+
Sbjct:  126 IGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPI 175

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HSP90_EIMTE (Heat shock protein 90 OS=Eimeria tenella GN=HSP90 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.112e-64
Identity = 91/119 (76.47%), Postives = 105/119 (88.24%), Query Frame = 1

Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            M   ETFAF A+I QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+E++T+  KL  +PELFIR++PDKAN  L+I +SG+GMTKADLVNNLGTIARSGTK FMEALQAG D+SMIG
Sbjct:    1 MENKETFAFNADIQQLMSLIINTFYSNKEIFLRELISNASDALDKIRYEAITEPEKLKTKPELFIRLIPDKANNTLTIENSGIGMTKADLVNNLGTIARSGTKAFMEALQAGGDISMIG 119

HSP 2 Score: 84.7297 bits (208), Expect = 1.112e-64
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVA+ V V +KHNDDEQYVWES AGGSFTV +D   EPL
Sbjct:  118 IGQFGVGFYSAYLVADSVTVVSKHNDDEQYVWESAAGGSFTVQKDDKYEPL 168

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 2.465e-64
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  +L I ++P+K ++ L+I+D+G+GMTKADLVNNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:   15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKDLKINLIPNKHDRTLTIVDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIG 131

HSP 2 Score: 83.5741 bits (205), Expect = 2.465e-64
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVG YSAYLVAEKV V TKHNDDEQY WES AGGSFTV  D +GEPL
Sbjct:  130 IGQFGVGSYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRLD-NGEPL 179

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.465e-64
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL+I+++P+K    L+IID+G+GMTK+DLVNNLGTIA+SGTK FMEALQAGAD+SMIG
Sbjct:    4 EAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADISMIG 120

HSP 2 Score: 83.1889 bits (204), Expect = 2.465e-64
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVA+KV VT+K+NDDEQYVWES AGGSFTV  D + EPL
Sbjct:  119 IGQFGVGFYSAYLVADKVTVTSKNNDDEQYVWESSAGGSFTVRAD-NSEPL 168

The following BLAST results are available for this feature:

BLAST of FC931887 vs. ExPASy Swiss-Prot

BLAST of FC931887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378


Match Name	E-value	Identity	Description
HS90B_BOVIN	5.015e-65	75.81	Heat shock protein HSP 90-beta OS=Bos taurus GN=HS...	[more]
HS90B_RAT	6.540e-65	75.00	Heat shock protein HSP 90-beta OS=Rattus norvegicu...	[more]
HS90B_PONAB	6.540e-65	75.00	Heat shock protein HSP 90-beta OS=Pongo abelii GN=...	[more]
HS90B_MACFA	6.540e-65	75.00	Heat shock protein HSP 90-beta OS=Macaca fascicula...	[more]
HS90B_HUMAN	6.540e-65	75.00	Heat shock protein HSP 90-beta OS=Homo sapiens GN=...	[more]
HS90B_HORSE	6.540e-65	75.00	Heat shock protein HSP 90-beta OS=Equus caballus G...	[more]
HS90B_MOUSE	1.112e-64	75.00	Heat shock protein HSP 90-beta OS=Mus musculus GN=...	[more]
HSP90_EIMTE	1.112e-64	76.47	Heat shock protein 90 OS=Eimeria tenella GN=HSP90 ...	[more]
HS90A_CHICK	2.465e-64	78.63	Heat shock protein HSP 90-alpha OS=Gallus gallus G...	[more]
HSP83_DROME	2.465e-64	78.63	Heat shock protein 83 OS=Drosophila melanogaster G...	[more]

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Properties


Property Name	Value
Genbank description	C34202C05EF PostHarveN Citrus clementina cDNA clone C34202C05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931887 ID=FC931887; Name=FC931887; organism=Citrus clementina; type=EST; length=687bp
GATCGTCAAGTAGAAGCACTGTCTTGAGTTTTCCAATAGAAATCATCAAA
TCAGTTCGTACTCCTACTTCTTCAGCAAACAGCAAACGGCATTTGTATTC
GCTCGTTTTCGTTTTGCTCTGTTTCTTTTTGAACGTTTGGAGTTTTTGAG
TCTGGTCGGGAAACAATGGCTGACGTGCACATGGGAGAAACCGAGACCTT
CGCTTTTCAGGCTGAGATTAATCAGCTTTTAAGCTTGATCATCAATACTT
TTTACAGCAACAAAGAGATTTTCCTTCGTGAACTCATCAGCAACTCCTCT
GATGCGCTTGATAAGATCAGATTTGAGAGCTTAACCGACAAGAGCAAGCT
CGATGCTCAGCCAGAGCTTTTCATCAGAATTGTTCCTGACAAAGCCAACA
AGGCACTATCAATCATCGATAGCGGCGTTGGCATGACCAAAGCAGATTTG
GTGAATAACTTGGGAACAATTGCGAGGTCCGGAACAAAGGAGTTTATGGA
GGCATTACAGGCGGGTGCTGACGTAAGCATGATTGGGGCAGTTTGGTGTC
GGGTTCTACTCTGCTTATTTGGTGGCGGAGAAGGTTATTGTGACGACTAA
ACACAATGATGATGAACAATACGTTTGGGAGTCGCAGGCCGGTGGATCTT
TCACTGTTACTAGAGATGTTAGCGGTGAGCCTCTGGG