FC931887

Overview
NameFC931887
Unique NameFC931887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_PELLD (Chaperone protein htpG OS=Pelodictyon luteolum (strain DSM 273) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.981e-29
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 510
            + F ++AE+ QLL LI+++ Y++ EIFLREL+SN+SDAL K RF +LTD +      E  IRI  D    A +I D+G+GMT+ +L+ NLGT+ARSGT  FM+AL+
Sbjct:   10 QEFEYKAEMKQLLDLIVHSLYTHPEIFLRELVSNASDALSKARFSALTDDTMAKVSGEAAIRISLDAKTAAFAIEDTGIGMTEEELIANLGTVARSGTLGFMQALR 115          

HSP 2 Score: 40.817 bits (94), Expect = 4.981e-29
Identity = 20/52 (38.46%), Postives = 29/52 (55.77%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK--HNDDEQYVWESQAGGSFTVTRDVSGEP 682
            +GQFGVGFYS ++V + V V T+      E   W S   G++T+ +    EP
Sbjct:  126 IGQFGVGFYSVFMVTDDVTVETRSARAGSEGLRWRSSGQGTYTIEKIDKKEP 177          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_BACSK (Chaperone protein htpG OS=Bacillus clausii (strain KSM-K16) GN=htpG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.981e-29
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  205 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            FQAE  +LL +++N+ YS KEIFLRELISN+SDA+DK+ + SLTD S    +    I +  DK N+ L + D+G+GMTK +L  NLGTIA+SG+  F +  +      +IG
Sbjct:    6 FQAESKRLLEMMVNSIYSQKEIFLRELISNASDAIDKMYYRSLTDDSLSFEKDRYAIYVEADKDNRKLVMKDTGIGMTKEELEANLGTIAKSGSLAFKKETEIEDGHDIIG 116          

HSP 2 Score: 49.2914 bits (116), Expect = 4.981e-29
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHND-DEQYVWESQAGGSFTV 658
            +GQFGVGFY+A++VA+KV V T+  D D+ Y WES     +T+
Sbjct:  115 IGQFGVGFYAAFMVADKVTVITRSIDSDQAYKWESDGTDGYTI 157          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_NITWN (Chaperone protein htpG OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpG PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.483e-29
Identity = 50/121 (41.32%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  184 GETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFM---EALQAGADVSMIG 537
            G  E+  F+A++ +LL +++++ YS+K++FLRELISN++DA +++R+E+++D + L  +    I I  D   + L++ D+G+GM + +LV+ LGTIARSGTK F+   EA ++G  V++IG
Sbjct:    9 GAAESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYEAISDPALLTDETRPRISITIDAERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEAAESGDGVALIG 129          

HSP 2 Score: 46.9802 bits (110), Expect = 6.483e-29
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGGSFTVT 661
            +GQFGVGFYSA++VA++V +V+ +    E + W S   G+FTVT
Sbjct:  128 IGQFGVGFYSAFMVADQVDVVSRRAGAREAWRWSSDGKGTFTVT 171          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_AZOC5 (Chaperone protein htpG OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.484e-29
Identity = 51/120 (42.50%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  166 MADVHMGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL--DAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGA 519
            M        E+  F+A++ +LL L++++ YS+K++FLRELISN++DA +K+R+E++T  + L  DA+P + + I  D     L++ D+G+GM++ ++V  LGTIARSGTK FME ++A A
Sbjct:    1 MTTAEAAAPESRTFEADVAKLLHLMVHSVYSDKDVFLRELISNAADACEKLRYEAITTPALLGEDARPRITLAI--DAEGGRLTVEDNGIGMSRDEMVEALGTIARSGTKAFMERIEAAA 118          

HSP 2 Score: 48.1358 bits (113), Expect = 6.484e-29
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGGSFTVTR-DVSGEP 682
            +GQFGVGFYSA++VAEKV +++ +   D   +W S   G++TV   DV+  P
Sbjct:  126 IGQFGVGFYSAFMVAEKVDVISRRAGADTANIWSSDGKGAYTVGEIDVAQAP 177          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_COLP3 (Chaperone protein htpG OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.438e-29
Identity = 51/119 (42.86%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIG 537
            + +  AF ++  ++L L+I++ YSNKEIFLREL+SN++DA DK+RF++L+D +  +   +L +R+  DK N  L+I D+G+GM   +++ +LGTIA+SGT EF   L     +D  +IG
Sbjct:    6 QVQNHAFASDNAKILQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSDNTLYENDGDLRVRVSCDKENNTLTISDNGIGMNVDEVIEHLGTIAKSGTAEFFSQLSGDQASDSQLIG 124          

HSP 2 Score: 43.8986 bits (102), Expect = 8.438e-29
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDD---EQYVWESQAGGSFTVTR 664
            +GQFGVGFYSA++VA+KV V T+   D   +   W S   G FT  +
Sbjct:  123 IGQFGVGFYSAFIVADKVTVRTRKAGDSATDGVEWISAGEGEFTTAK 169          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_MYCTU (Chaperone protein htpG OS=Mycobacterium tuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.439e-29
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKE----FMEALQAGADVSMIG 537
            E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+L +K       +L I I  DKA + L++ D+G+GM + ++V+ +GT+A+SGT E      EA  A A   +IG
Sbjct:    6 EQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDLEVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQLREAKNAAASEELIG 124          

HSP 2 Score: 45.0542 bits (105), Expect = 8.439e-29
Identity = 19/43 (44.19%), Postives = 31/43 (72.09%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGGSFTV 658
            +GQFG+GFYS+++VA+KV ++T K  +     WES   G++T+
Sbjct:  123 IGQFGIGFYSSFMVADKVQLLTRKAGESAATRWESSGEGTYTI 165          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_MYCTA (Chaperone protein htpG OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.439e-29
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKE----FMEALQAGADVSMIG 537
            E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+L +K       +L I I  DKA + L++ D+G+GM + ++V+ +GT+A+SGT E      EA  A A   +IG
Sbjct:    6 EQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDLEVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQLREAKNAAASEELIG 124          

HSP 2 Score: 45.0542 bits (105), Expect = 8.439e-29
Identity = 19/43 (44.19%), Postives = 31/43 (72.09%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGGSFTV 658
            +GQFG+GFYS+++VA+KV ++T K  +     WES   G++T+
Sbjct:  123 IGQFGIGFYSSFMVADKVQLLTRKAGESAATRWESSGEGTYTI 165          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_MYCBP (Chaperone protein htpG OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.439e-29
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKE----FMEALQAGADVSMIG 537
            E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+L +K       +L I I  DKA + L++ D+G+GM + ++V+ +GT+A+SGT E      EA  A A   +IG
Sbjct:    6 EQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDLEVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQLREAKNAAASEELIG 124          

HSP 2 Score: 45.0542 bits (105), Expect = 8.439e-29
Identity = 19/43 (44.19%), Postives = 31/43 (72.09%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGGSFTV 658
            +GQFG+GFYS+++VA+KV ++T K  +     WES   G++T+
Sbjct:  123 IGQFGIGFYSSFMVADKVQLLTRKAGESAATRWESSGEGTYTI 165          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_MYCBO (Chaperone protein htpG OS=Mycobacterium bovis GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.439e-29
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKE----FMEALQAGADVSMIG 537
            E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+L +K       +L I I  DKA + L++ D+G+GM + ++V+ +GT+A+SGT E      EA  A A   +IG
Sbjct:    6 EQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDLEVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQLREAKNAAASEELIG 124          

HSP 2 Score: 45.0542 bits (105), Expect = 8.439e-29
Identity = 19/43 (44.19%), Postives = 31/43 (72.09%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGGSFTV 658
            +GQFG+GFYS+++VA+KV ++T K  +     WES   G++T+
Sbjct:  123 IGQFGIGFYSSFMVADKVQLLTRKAGESAATRWESSGEGTYTI 165          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_VESOH (Chaperone protein htpG OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=htpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.445e-29
Identity = 55/117 (47.01%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ--AGADVSMIG 537
            +T +FQ E++QLL L+I++ YSNKEIFLRELISN+SDA+DK++F+SL+D + ++ +  L I I  +K    ++I D+G+GM++ ++  N+GTIA SGTK+F+++L      D ++IG
Sbjct:    5 QTHSFQTEVSQLLHLMIHSLYSNKEIFLRELISNASDAVDKLKFKSLSDDTLIEGKEALQIHIDVNKDANTITITDNGIGMSEVEVNKNIGTIANSGTKKFLKSLNETQAQDSNLIG 121          

HSP 2 Score: 36.5798 bits (83), Expect = 8.445e-29
Identity = 16/45 (35.56%), Postives = 28/45 (62.22%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYS+++V++KV + T+       +   W S   G +++
Sbjct:  120 IGQFGVGFYSSFIVSDKVEIITRKAGSKSKKGTKWASTGKGKYSI 164          
The following BLAST results are available for this feature:
BLAST of FC931887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
HTPG_PELLD4.981e-2950.94Chaperone protein htpG OS=Pelodictyon luteolum (st... [more]
HTPG_BACSK4.981e-2947.75Chaperone protein htpG OS=Bacillus clausii (strain... [more]
HTPG_NITWN6.483e-2941.32Chaperone protein htpG OS=Nitrobacter winogradskyi... [more]
HTPG_AZOC56.484e-2942.50Chaperone protein htpG OS=Azorhizobium caulinodans... [more]
HTPG_COLP38.438e-2942.86Chaperone protein htpG OS=Colwellia psychrerythrae... [more]
HTPG_MYCTU8.439e-2947.06Chaperone protein htpG OS=Mycobacterium tuberculos... [more]
HTPG_MYCTA8.439e-2947.06Chaperone protein htpG OS=Mycobacterium tuberculos... [more]
HTPG_MYCBP8.439e-2947.06Chaperone protein htpG OS=Mycobacterium bovis (str... [more]
HTPG_MYCBO8.439e-2947.06Chaperone protein htpG OS=Mycobacterium bovis GN=h... [more]
HTPG_VESOH8.445e-2947.01Chaperone protein htpG OS=Vesicomyosocius okutanii... [more]

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Properties
Property NameValue
Genbank descriptionC34202C05EF PostHarveN Citrus clementina cDNA clone C34202C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931887 ID=FC931887; Name=FC931887; organism=Citrus clementina; type=EST; length=687bp
GATCGTCAAGTAGAAGCACTGTCTTGAGTTTTCCAATAGAAATCATCAAA
TCAGTTCGTACTCCTACTTCTTCAGCAAACAGCAAACGGCATTTGTATTC
GCTCGTTTTCGTTTTGCTCTGTTTCTTTTTGAACGTTTGGAGTTTTTGAG
TCTGGTCGGGAAACAATGGCTGACGTGCACATGGGAGAAACCGAGACCTT
CGCTTTTCAGGCTGAGATTAATCAGCTTTTAAGCTTGATCATCAATACTT
TTTACAGCAACAAAGAGATTTTCCTTCGTGAACTCATCAGCAACTCCTCT
GATGCGCTTGATAAGATCAGATTTGAGAGCTTAACCGACAAGAGCAAGCT
CGATGCTCAGCCAGAGCTTTTCATCAGAATTGTTCCTGACAAAGCCAACA
AGGCACTATCAATCATCGATAGCGGCGTTGGCATGACCAAAGCAGATTTG
GTGAATAACTTGGGAACAATTGCGAGGTCCGGAACAAAGGAGTTTATGGA
GGCATTACAGGCGGGTGCTGACGTAAGCATGATTGGGGCAGTTTGGTGTC
GGGTTCTACTCTGCTTATTTGGTGGCGGAGAAGGTTATTGTGACGACTAA
ACACAATGATGATGAACAATACGTTTGGGAGTCGCAGGCCGGTGGATCTT
TCACTGTTACTAGAGATGTTAGCGGTGAGCCTCTGGG
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