FC931887

Overview
NameFC931887
Unique NameFC931887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_MYCLE (Chaperone protein htpG OS=Mycobacterium leprae GN=htpG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.145e-26
Identity = 53/117 (45.30%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ----PELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADV 525
            + E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+  +K  LD +     +L I I  DK  + L++ D+G+GMT+A++V+ +GT+A+SGT +  + L A  ++
Sbjct:    4 QVEQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRLEAFRNKD-LDPRTVDTSDLHIEIEVDKNTRILTVRDNGIGMTRAEVVDLIGTLAKSGTAKLRQKLHAAKNL 119          

HSP 2 Score: 39.6614 bits (91), Expect = 2.145e-26
Identity = 17/43 (39.53%), Postives = 28/43 (65.12%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGGSFTV 658
            +GQFG+GFYS+++VA KV ++T K  +     W S    ++T+
Sbjct:  129 IGQFGIGFYSSFMVANKVELLTRKAGETAATRWSSDGEATYTI 171          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_DESDG (Chaperone protein htpG OS=Desulfovibrio desulfuricans (strain G20) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.635e-26
Identity = 48/114 (42.11%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  166 MADVHMGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            M+  H    E   F+ E+ +LL +I ++ Y+N+EIFLREL+SN+SDALDK+RF     ++   A  +L I I  ++  + L++ D+G+GMT+ +L++NLGTIA SG++ F++ L
Sbjct:    1 MSKEHGAAAEKHEFRTEVRKLLHIITHSLYTNREIFLRELVSNASDALDKLRFAQTRGEAAPAADLDLNIAITVNEETRTLTVSDTGIGMTRQELIDNLGTIASSGSERFLKEL 114          

HSP 2 Score: 38.891 bits (89), Expect = 3.635e-26
Identity = 19/42 (45.24%), Postives = 27/42 (64.29%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQ--YVWESQAGGSF 652
            +G+FGVGFY+ ++VA+ V VTT+   D    + W S   GSF
Sbjct:  125 IGRFGVGFYAVFMVADSVTVTTRSALDASGAWRWTSDGLGSF 166          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_RHIEC (Chaperone protein htpG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=htpG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.016e-26
Identity = 44/105 (41.90%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            E+  F+A++ +LL +++++ YS+K +FLRELISN +DA +K+R+E++   S L A  E  I +  D+ ++ L + D+G+GM + +++  LGTIARSGT+ FME +
Sbjct:   10 ESHVFEADVARLLHMMVHSVYSDKGVFLRELISNGADACEKLRYEAIETPSLLAADAESRIMLRLDEESRQLVVEDNGIGMRRDEMIEALGTIARSGTRAFMERI 114          

HSP 2 Score: 44.669 bits (104), Expect = 8.016e-26
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYS ++VAE V +++ +   +E + W S   GS++V
Sbjct:  126 IGQFGVGFYSCFMVAEHVDVISRRAGSEEAWKWSSDGKGSYSV 168          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_DESVH (Chaperone protein htpG OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.767e-25
Identity = 51/106 (48.11%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  202 AFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELF--IRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQA 513
            AF+ E+ ++L +I ++ Y+N+EIFLREL+SN+SDALDK+RF  +  +      P+L   I I  DK  + L+I D+GVGMT+ +L++NLGTIARSG+++F+  L A
Sbjct:    9 AFRTEVRKMLHIITHSLYTNREIFLRELVSNASDALDKLRF--IRSRGDAVVAPDLAPGIDISVDKEARILTIADTGVGMTRQELMDNLGTIARSGSEQFVADLAA 112          

HSP 2 Score: 40.4318 bits (93), Expect = 1.767e-25
Identity = 18/44 (40.91%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKH--NDDEQYVWESQAGGSFTV 658
            +G+FGVGFY+ ++VA++V VT++     +  + W S   G FTV
Sbjct:  125 IGRFGVGFYAVFMVADRVEVTSRSYIEGEAAHTWTSDGLGEFTV 168          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: TRAP1_DICDI (TNF receptor-associated protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=trap1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 54/134 (40.30%), Postives = 82/134 (61.19%), Query Frame = 1
Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL-DAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGAD-VSMIGAVWCRVLLCLFGG 576
            +G +E  +FQ E  ++L ++  + Y+ KE+F+RELISN+SDA++K+R   LT+ S + DA     I+I  D+ NK L I DSG+GMTK +++ NLG I  SG+ +F++ L    D  S+IG        C   G
Sbjct:   95 IGLSEKLSFQTETQKILHIVAESLYTEKEVFIRELISNASDAIEKVRHTQLTNASMIEDASIPFEIKISTDEDNKTLIIQDSGIGMTKDEMIKNLGKIGYSGSSDFIKKLGENPDKASIIGQFGVGFYSCFMVG 228          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_PORGI (Chaperone protein htpG OS=Porphyromonas gingivalis GN=htpG PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.094e-11
Identity = 30/95 (31.58%), Postives = 56/95 (58.95%), Query Frame = 1
Query:  220 NQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQP-ELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFME 501
            + +  +I    YS+ EIFLRE++SN+ DA  K++  +LT   +   +  +L + +  D+  + +++ D GVGMT+ ++   +  IA S  +EF+E
Sbjct:   12 DNIFPVIKKFLYSDHEIFLREIVSNAVDATQKLK--TLTSVGEFKGETGDLRVTVSVDEVARTITVSDRGVGMTEEEVEKYINQIAFSSAEEFLE 104          

HSP 2 Score: 35.039 bits (79), Expect = 1.094e-11
Identity = 16/44 (36.36%), Postives = 25/44 (56.82%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK--HNDDEQYVWESQAGGSFTV 658
            +G FG+GFYSA++V+E+V V T+    D     W       +T+
Sbjct:  114 IGHFGLGFYSAFMVSERVDVITRSFREDATAVKWSCDGSPEYTL 157          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_PORG3 (Chaperone protein htpG OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=htpG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 3.105e-11
Identity = 29/95 (30.53%), Postives = 56/95 (58.95%), Query Frame = 1
Query:  220 NQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQP-ELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFME 501
            + +  +I    YS+ +IFLRE++SN+ DA  K++  +LT   +   +  +L + +  D+  + +++ D GVGMT+ ++   +  IA S  +EF+E
Sbjct:   12 DNIFPVIKKFLYSDHKIFLREIVSNAVDATQKLK--TLTSVGEFKGETGDLRVTVSVDEVARTITVSDRGVGMTEEEVEKYINQIAFSSAEEFLE 104          

HSP 2 Score: 35.039 bits (79), Expect = 3.105e-11
Identity = 16/44 (36.36%), Postives = 25/44 (56.82%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK--HNDDEQYVWESQAGGSFTV 658
            +G FG+GFYSA++V+E+V V T+    D     W       +T+
Sbjct:  114 IGHFGLGFYSAFMVSERVDVITRSFREDATAVKWSCDGSPEYTL 157          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_BACTN (Chaperone protein htpG OS=Bacteroides thetaiotaomicron GN=htpG PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 4.031e-11
Identity = 30/99 (30.30%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  226 LLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGAD 522
            +  +I    YS+ EIFLREL+SN+ DA  K+   +   + K +   +L I +  +     ++I D G+G+T  ++   +  IA SG  +F+E  +  A+
Sbjct:   13 IFPIIKKFLYSDHEIFLRELVSNAVDATQKLNTLASIGEFKGEL-GDLTIHV--ELGKDTITISDRGIGLTAEEIEKYINQIAFSGANDFLEKYKDDAN 108          

HSP 2 Score: 40.817 bits (94), Expect = 4.031e-11
Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYV-WESQAGGSFTV 658
            +G FG+GFYSA++VA+KV I+T  + D+ Q + W       FT+
Sbjct:  111 IGHFGLGFYSAFMVAKKVEIITKSYRDEAQAIKWTCDGSPEFTI 154          
The following BLAST results are available for this feature:
BLAST of FC931887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
HTPG_MYCLE2.145e-2645.30Chaperone protein htpG OS=Mycobacterium leprae GN=... [more]
HTPG_DESDG3.635e-2642.11Chaperone protein htpG OS=Desulfovibrio desulfuric... [more]
HTPG_RHIEC8.016e-2641.90Chaperone protein htpG OS=Rhizobium etli (strain C... [more]
HTPG_DESVH1.767e-2548.11Chaperone protein htpG OS=Desulfovibrio vulgaris (... [more]
TRAP1_DICDI1.939e-2040.30TNF receptor-associated protein 1 homolog, mitocho... [more]
HTPG_PORGI1.094e-1131.58Chaperone protein htpG OS=Porphyromonas gingivalis... [more]
HTPG_PORG33.105e-1130.53Chaperone protein htpG OS=Porphyromonas gingivalis... [more]
HTPG_BACTN4.031e-1130.30Chaperone protein htpG OS=Bacteroides thetaiotaomi... [more]

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Properties
Property NameValue
Genbank descriptionC34202C05EF PostHarveN Citrus clementina cDNA clone C34202C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931887 ID=FC931887; Name=FC931887; organism=Citrus clementina; type=EST; length=687bp
GATCGTCAAGTAGAAGCACTGTCTTGAGTTTTCCAATAGAAATCATCAAA
TCAGTTCGTACTCCTACTTCTTCAGCAAACAGCAAACGGCATTTGTATTC
GCTCGTTTTCGTTTTGCTCTGTTTCTTTTTGAACGTTTGGAGTTTTTGAG
TCTGGTCGGGAAACAATGGCTGACGTGCACATGGGAGAAACCGAGACCTT
CGCTTTTCAGGCTGAGATTAATCAGCTTTTAAGCTTGATCATCAATACTT
TTTACAGCAACAAAGAGATTTTCCTTCGTGAACTCATCAGCAACTCCTCT
GATGCGCTTGATAAGATCAGATTTGAGAGCTTAACCGACAAGAGCAAGCT
CGATGCTCAGCCAGAGCTTTTCATCAGAATTGTTCCTGACAAAGCCAACA
AGGCACTATCAATCATCGATAGCGGCGTTGGCATGACCAAAGCAGATTTG
GTGAATAACTTGGGAACAATTGCGAGGTCCGGAACAAAGGAGTTTATGGA
GGCATTACAGGCGGGTGCTGACGTAAGCATGATTGGGGCAGTTTGGTGTC
GGGTTCTACTCTGCTTATTTGGTGGCGGAGAAGGTTATTGTGACGACTAA
ACACAATGATGATGAACAATACGTTTGGGAGTCGCAGGCCGGTGGATCTT
TCACTGTTACTAGAGATGTTAGCGGTGAGCCTCTGGG
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