FC931887 | Citrus Genome Database

Overview


Name	FC931887
Unique Name	FC931887
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	687

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.267e-48
Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = 1

Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  +      +L I+I  DK NK LSI D GVGMTK DL+ NLGTIA+SGT  F+E +Q G D+++IG
Sbjct:   78 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVMGEGDTAKLEIQIKLDKENKILSIRDRGVGMTKEDLIKNLGTIAKSGTSAFVEKMQTGGDLNLIG 194

HSP 2 Score: 77.0258 bits (188), Expect = 4.267e-48
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYS YLVA+ V V +KHNDD+QYVWES+A GSF ++ D   EPL
Sbjct:  193 IGQFGVGFYSVYLVADYVEVVSKHNDDKQYVWESKADGSFAISEDTWNEPL 243

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.586e-48
Identity = 70/103 (67.96%), Postives = 88/103 (85.44%), Query Frame = 1

Query:  229 LSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            +SLIINTFYSNKEIFL+ELISN+SDALDKIR+ESLTD SKLD   EL I I+P+     L+++++G+GMTKADL+NNLG IA+SGT+ FMEA Q+ A++SMIG
Sbjct:    1 MSLIINTFYSNKEIFLQELISNASDALDKIRYESLTDPSKLDGGKELKIDIIPNPRECILTLVNTGIGMTKADLINNLGAIAKSGTEAFMEAFQSCAEISMIG 103

HSP 2 Score: 71.2478 bits (173), Expect = 5.586e-48
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVAEKV + TKHND+EQY W S AG SFT+  D  GEP+
Sbjct:  102 IGQFGVGFYSAYLVAEKVAI-TKHNDEEQYSWVSSAGSSFTLHVD-HGEPI 150

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.091e-47
Identity = 70/117 (59.83%), Postives = 90/117 (76.92%), Query Frame = 1

Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  L      +L I+I  DKA K LSI D G+GMTK DL+ NLGTIA+SGT  F+E +Q+  D+++IG
Sbjct:   77 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKDVLGEGDTAKLEIQIKLDKAKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQSSGDLNLIG 193

HSP 2 Score: 76.6406 bits (187), Expect = 2.091e-47
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSAYLVA+ + V +KHNDD QYVWES+A G F V+ D   EPL
Sbjct:  192 IGQFGVGFYSAYLVADYIEVISKHNDDSQYVWESKANGKFAVSEDTWNEPL 242

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.956e-46
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            + E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  L      +L I+I  DK  K LSI D G+GMTK DL+ NLGTIA+SGT  F+E +Q   D+++IG
Sbjct:   76 DAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEILGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIG 194

HSP 2 Score: 74.7146 bits (182), Expect = 2.956e-46
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYS YLV + V V +KHNDD+QY+WES+A G+F ++ DV  EPL
Sbjct:  193 IGQFGVGFYSVYLVPDYVEVISKHNDDKQYIWESKADGAFAISEDVWNEPL 243

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_MACFA (Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 8.329e-43
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL ++I  DK    L + D+GVGMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   72 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178

HSP 2 Score: 66.6254 bits (161), Expect = 8.329e-43
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSA+LVA+KVIVT+KHN+D Q++WES +   F+V  D  G  L
Sbjct:  192 IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTL 241

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_HUMAN (Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 8.329e-43
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL ++I  DK    L + D+GVGMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   72 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178

HSP 2 Score: 66.6254 bits (161), Expect = 8.329e-43
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSA+LVA+KVIVT+KHN+D Q++WES +   F+V  D  G  L
Sbjct:  192 IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTL 241

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_PIG (Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.414e-42
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL ++I  DK    L + D+GVGMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   72 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178

HSP 2 Score: 66.6254 bits (161), Expect = 1.414e-42
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSA+LVA+KVIVT+KHN+D Q++WES +   F+V  D  G  L
Sbjct:  192 IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTL 241

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_CANFA (Endoplasmin OS=Canis familiaris GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.414e-42
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL ++I  DK    L + D+GVGMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   72 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178

HSP 2 Score: 66.6254 bits (161), Expect = 1.414e-42
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSA+LVA+KVIVT+KHN+D Q++WES +   F+V  D  G  L
Sbjct:  192 IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTL 241

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_BOVIN (Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.414e-42
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL ++I  DK    L + D+GVGMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   72 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178

HSP 2 Score: 66.6254 bits (161), Expect = 1.414e-42
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSA+LVA+KVIVT+KHN+D Q++WES +   F+V  D  G  L
Sbjct:  192 IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTL 241

[Close]

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: ENPL_MOUSE (Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.414e-42
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL ++I  DK    L + D+GVGMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   72 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178

HSP 2 Score: 66.6254 bits (161), Expect = 1.414e-42
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEPL 685
            +GQFGVGFYSA+LVA+KVIVT+KHN+D Q++WES +   F+V  D  G  L
Sbjct:  192 IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTL 241

The following BLAST results are available for this feature:

BLAST of FC931887 vs. ExPASy Swiss-Prot

BLAST of FC931887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378


Match Name	E-value	Identity	Description
ENPL_HORVU	4.267e-48	60.68	Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1	[more]
H90B4_HUMAN	5.586e-48	67.96	Putative heat shock protein HSP 90-beta 4 OS=Homo ...	[more]
ENPL_ARATH	2.091e-47	59.83	Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD...	[more]
ENPL_CATRO	2.956e-46	57.98	Endoplasmin homolog OS=Catharanthus roseus GN=HSP9...	[more]
ENPL_MACFA	8.329e-43	58.88	Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2...	[more]
ENPL_HUMAN	8.329e-43	58.88	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	[more]
ENPL_PIG	1.414e-42	58.88	Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3	[more]
ENPL_CANFA	1.414e-42	58.88	Endoplasmin OS=Canis familiaris GN=HSP90B1 PE=1 SV...	[more]
ENPL_BOVIN	1.414e-42	58.88	Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1	[more]
ENPL_MOUSE	1.414e-42	58.88	Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	C34202C05EF PostHarveN Citrus clementina cDNA clone C34202C05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931887 ID=FC931887; Name=FC931887; organism=Citrus clementina; type=EST; length=687bp
GATCGTCAAGTAGAAGCACTGTCTTGAGTTTTCCAATAGAAATCATCAAA
TCAGTTCGTACTCCTACTTCTTCAGCAAACAGCAAACGGCATTTGTATTC
GCTCGTTTTCGTTTTGCTCTGTTTCTTTTTGAACGTTTGGAGTTTTTGAG
TCTGGTCGGGAAACAATGGCTGACGTGCACATGGGAGAAACCGAGACCTT
CGCTTTTCAGGCTGAGATTAATCAGCTTTTAAGCTTGATCATCAATACTT
TTTACAGCAACAAAGAGATTTTCCTTCGTGAACTCATCAGCAACTCCTCT
GATGCGCTTGATAAGATCAGATTTGAGAGCTTAACCGACAAGAGCAAGCT
CGATGCTCAGCCAGAGCTTTTCATCAGAATTGTTCCTGACAAAGCCAACA
AGGCACTATCAATCATCGATAGCGGCGTTGGCATGACCAAAGCAGATTTG
GTGAATAACTTGGGAACAATTGCGAGGTCCGGAACAAAGGAGTTTATGGA
GGCATTACAGGCGGGTGCTGACGTAAGCATGATTGGGGCAGTTTGGTGTC
GGGTTCTACTCTGCTTATTTGGTGGCGGAGAAGGTTATTGTGACGACTAA
ACACAATGATGATGAACAATACGTTTGGGAGTCGCAGGCCGGTGGATCTT
TCACTGTTACTAGAGATGTTAGCGGTGAGCCTCTGGG