FC931887 | Citrus Genome Database

Overview


Name	FC931887
Unique Name	FC931887
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	687

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_BURCA (Chaperone protein htpG OS=Burkholderia cenocepacia (strain AU 1054) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.155e-35
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1

Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIG 537
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P L IRI  DKA + ++I D+G+GM++ + + NLGTIARSGTKEF   L      D ++IG
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPNLRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIG 120

HSP 2 Score: 45.0542 bits (105), Expect = 4.155e-35
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHND---DEQYVWESQAGGSFTV 658
            +GQFGVGFYS ++VA+K+ V T+      +E   WES   G FT+
Sbjct:  119 IGQFGVGFYSGFIVADKITVETRRAGLPANEAVRWESAGEGDFTI 163

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJR (Chaperone protein htpG OS=Campylobacter jejuni (strain RM1221) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.157e-35
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 1

Query:  205 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIG 537
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK  K LSI D+G+GM K DL+NNLGTIA+SGTK F+E L   A  D  +IG
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIG 115

HSP 2 Score: 48.521 bits (114), Expect = 4.157e-35
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGG 646
            +GQFGVGFYSA++VA K+ +++ K  DD+ Y+W S A G
Sbjct:  114 IGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG 152

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJJ (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.157e-35
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 1

Query:  205 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIG 537
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK  K LSI D+G+GM K DL+NNLGTIA+SGTK F+E L   A  D  +IG
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIG 115

HSP 2 Score: 48.521 bits (114), Expect = 4.157e-35
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGG 646
            +GQFGVGFYSA++VA K+ +++ K  DD+ Y+W S A G
Sbjct:  114 IGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG 152

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJE (Chaperone protein htpG OS=Campylobacter jejuni GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.157e-35
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 1

Query:  205 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIG 537
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK  K LSI D+G+GM K DL+NNLGTIA+SGTK F+E L   A  D  +IG
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIG 115

HSP 2 Score: 48.521 bits (114), Expect = 4.157e-35
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGG 646
            +GQFGVGFYSA++VA K+ +++ K  DD+ Y+W S A G
Sbjct:  114 IGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG 152

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJD (Chaperone protein htpG OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.157e-35
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 1

Query:  205 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIG 537
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK  K LSI D+G+GM K DL+NNLGTIA+SGTK F+E L   A  D  +IG
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKNDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIG 115

HSP 2 Score: 48.521 bits (114), Expect = 4.157e-35
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGG 646
            +GQFGVGFYSA++VA K+ +++ K  DD+ Y+W S A G
Sbjct:  114 IGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG 152

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJ8 (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.157e-35
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 1

Query:  205 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIG 537
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK  K LSI D+G+GM K DL+NNLGTIA+SGTK F+E L   A  D  +IG
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIG 115

HSP 2 Score: 48.521 bits (114), Expect = 4.157e-35
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKV-IVTTKHNDDEQYVWESQAGG 646
            +GQFGVGFYSA++VA K+ +++ K  DD+ Y+W S A G
Sbjct:  114 IGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG 152

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_BURCM (Chaperone protein htpG OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.412e-35
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1

Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIG 537
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P L IRI  DKA + ++I D+G+GM++ + + NLGTIARSGTKEF   L      D ++IG
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPNLRIRIGFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIG 120

HSP 2 Score: 45.0542 bits (105), Expect = 5.412e-35
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHND---DEQYVWESQAGGSFTV 658
            +GQFGVGFYS ++VA+K+ V T+      +E   WES   G FT+
Sbjct:  119 IGQFGVGFYSGFIVADKITVETRRAGLPANEAVRWESAGEGDFTI 163

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_BAUCH (Chaperone protein htpG OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=htpG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.412e-35
Identity = 56/107 (52.34%), Postives = 83/107 (77.57%), Query Frame = 1

Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL 507
            E ET  FQ+E+ QLL+L+I++ YSNKEIFLRELISN+SDA DK+RF +L      +   EL++RI+ +K  + ++IID+G+GM + ++++NLGTIA+SGTK F+E +
Sbjct:    5 EQETLGFQSEVKQLLNLMIHSLYSNKEIFLRELISNASDAADKLRFLALAKPDLYEGNGELYVRIICNKEKRTITIIDNGIGMCRTEVIDNLGTIAKSGTKAFLETI 111

HSP 2 Score: 46.9802 bits (110), Expect = 5.412e-35
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA+KVIV T+    + DE   WES   G + +
Sbjct:  122 IGQFGVGFYSAFIVAQKVIVRTRAAGASADEGVHWESTGEGDYII 166

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: H90B2_HUMAN (Putative heat shock protein HSP 90-beta 2 OS=Homo sapiens GN=HSP90AB2P PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.108e-35
Identity = 77/116 (66.38%), Postives = 95/116 (81.90%), Query Frame = 1

Query:  172 DVHMGE--TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIAR-SGTKEFMEALQ 510
            +VH+GE   ETFAFQAEI QL+SLIINTFYSNKEIFL ELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+     L+++D+G+GMTKADL+NNLGTIA+     E++E +Q
Sbjct:    4 EVHLGEKEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNTQEHTLTLVDTGIGMTKADLINNLGTIAKFQDQTEYLEEMQ 119

BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_NITEC (Chaperone protein htpG OS=Nitrosomonas eutropha (strain C91) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.196e-34
Identity = 60/117 (51.28%), Postives = 89/117 (76.07%), Query Frame = 1

Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIG 537
            E   FQAE  QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L+D +  ++ P+L IRI  DK  + ++I D+G+GM++ ++++N+GTIA+SGT+EF+++L      D ++IG
Sbjct:    8 EHLNFQAEAKQLLRLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDTALYESDPDLKIRIAYDKEARTITISDNGIGMSRQEVIDNIGTIAKSGTREFIDSLTGDQARDANLIG 124

HSP 2 Score: 45.4394 bits (106), Expect = 1.196e-34
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 2

Query:  533 LGQFGVGFYSAYLVAEKVIVTTKH---NDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA+KV +TT+      +    WES   G +T+
Sbjct:  123 IGQFGVGFYSAFIVADKVTLTTRRAGLTTEHGVRWESSGEGEYTL 167

The following BLAST results are available for this feature:

BLAST of FC931887 vs. ExPASy Swiss-Prot

BLAST of FC931887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378


Match Name	E-value	Identity	Description
HTPG_BURCA	4.155e-35	54.70	Chaperone protein htpG OS=Burkholderia cenocepacia...	[more]
HTPG_CAMJR	4.157e-35	58.41	Chaperone protein htpG OS=Campylobacter jejuni (st...	[more]
HTPG_CAMJJ	4.157e-35	58.41	Chaperone protein htpG OS=Campylobacter jejuni sub...	[more]
HTPG_CAMJE	4.157e-35	58.41	Chaperone protein htpG OS=Campylobacter jejuni GN=...	[more]
HTPG_CAMJD	4.157e-35	58.41	Chaperone protein htpG OS=Campylobacter jejuni sub...	[more]
HTPG_CAMJ8	4.157e-35	58.41	Chaperone protein htpG OS=Campylobacter jejuni sub...	[more]
HTPG_BURCM	5.412e-35	54.70	Chaperone protein htpG OS=Burkholderia ambifaria (...	[more]
HTPG_BAUCH	5.412e-35	52.34	Chaperone protein htpG OS=Baumannia cicadellinicol...	[more]
H90B2_HUMAN	8.108e-35	66.38	Putative heat shock protein HSP 90-beta 2 OS=Homo ...	[more]
HTPG_NITEC	1.196e-34	51.28	Chaperone protein htpG OS=Nitrosomonas eutropha (s...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34202C05EF PostHarveN Citrus clementina cDNA clone C34202C05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931887 ID=FC931887; Name=FC931887; organism=Citrus clementina; type=EST; length=687bp
GATCGTCAAGTAGAAGCACTGTCTTGAGTTTTCCAATAGAAATCATCAAA
TCAGTTCGTACTCCTACTTCTTCAGCAAACAGCAAACGGCATTTGTATTC
GCTCGTTTTCGTTTTGCTCTGTTTCTTTTTGAACGTTTGGAGTTTTTGAG
TCTGGTCGGGAAACAATGGCTGACGTGCACATGGGAGAAACCGAGACCTT
CGCTTTTCAGGCTGAGATTAATCAGCTTTTAAGCTTGATCATCAATACTT
TTTACAGCAACAAAGAGATTTTCCTTCGTGAACTCATCAGCAACTCCTCT
GATGCGCTTGATAAGATCAGATTTGAGAGCTTAACCGACAAGAGCAAGCT
CGATGCTCAGCCAGAGCTTTTCATCAGAATTGTTCCTGACAAAGCCAACA
AGGCACTATCAATCATCGATAGCGGCGTTGGCATGACCAAAGCAGATTTG
GTGAATAACTTGGGAACAATTGCGAGGTCCGGAACAAAGGAGTTTATGGA
GGCATTACAGGCGGGTGCTGACGTAAGCATGATTGGGGCAGTTTGGTGTC
GGGTTCTACTCTGCTTATTTGGTGGCGGAGAAGGTTATTGTGACGACTAA
ACACAATGATGATGAACAATACGTTTGGGAGTCGCAGGCCGGTGGATCTT
TCACTGTTACTAGAGATGTTAGCGGTGAGCCTCTGGG