FC931889

Overview
NameFC931889
Unique NameFC931889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: SORCN_SCHJA (Sorcin OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:  397 FEMVDRDRSGFIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 675
            F  VD D+SG I  NELQ +LS+G     ++ T++L++ +F    +   I   EF  L+  +  W+  F RYDRD SG IDL E  +AL S GY
Sbjct:   12 FSRVDADKSGSISANELQTSLSNGLGTPLNIRTVQLMVAMFDRDMNGT-INFNEFLGLFKYVQDWQTCFRRYDRDNSGSIDLNEFSNALISFGY 104
The following BLAST results are available for this feature:
BLAST of FC931889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SORCN_SCHJA2.734e-1141.49Sorcin OS=Schistosoma japonicum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202C07EF PostHarveN Citrus clementina cDNA clone C34202C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931889 ID=FC931889; Name=FC931889; organism=Citrus clementina; type=EST; length=678bp
GAGGAATTCCAGAAGTCTCTCTCTCTCACTTCTCACGTTTGTGATCTTGT
TCTGCTTCTGCTCATAGCGTTGACGTTTTAATTTTTGTAAGTAAATTATT
AAAAAATCCGGTACCAAATCACAAATCATAATCACCATCAGCATCATTGA
ATGTCAAATTACAGCGGATCCTACTCTTCATCTCAATCCTACGCGCCCTC
TGCGCCTTCGCTGCCGGAGACCCACAACAACTCCTCTTACAATAACTCAT
CTTCGGCTCAAAGCTATTATGCCCAGCCTCCTCCGCCTCCGCCGCCGTCG
CAGCAGCAGCCGTACCCCGCGCCGAGTTACGGGCAGTTTTCGGCATATGG
GCACTCCGCGTTTCCGCCGGGGACCCACCCAGATGTGATAAGGAGCTTTG
AAATGGTTGATAGAGATAGAAGTGGGTTTATTGATGAGAATGAGTTGCAG
CAAGCACTTTCTTCTGGGTACCAGAGGTTTAGTCTCAGTACTATTAGATT
GCTCATGTTTCTTTTCAGGAATCCCCATGATTCGTTGAGAATTGGGCCTA
AAGAATTTGCTGATTTGTGGAGTTGCCTTGGTCAATGGCGCGCTATATTT
GAGAGATATGATCGAGACAGAAGTGGGAAAATTGATCTGATGGAATTGAG
GGATGCTCTCTACAGCATTGGGTATGCA
back to top