FC931946

Overview
NameFC931946
Unique NameFC931946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 59/194 (30.41%), Postives = 88/194 (45.36%), Query Frame = 1
Query:   73 KRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRT 648
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  +++ +   + +GL V+G  C +     REKL+ T   +  G ++IL++NA    F               V++ N  +   + +   P ++            VAG    P       SK A+  LTKN A E A   IRVN +AP +I+T
Sbjct:    8 RRNPLSNKVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRG-IDILVSNAAVNPFFGN-LMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKT 199          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 61/200 (30.50%), Postives = 87/200 (43.50%), Query Frame = 1
Query:   82 SLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQ------VSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDK 663
            +L   T L+TGG  GIGYA V+      A V     +E +    I++  +  L           AC   IR+  +K          G L++LINNAG  I              V+  N    + +S+ A   +             V GV+A P      +SKG + QLT+++A ++AK  IRVN V P II TPL +K
Sbjct:    2 NLTDKTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHTDITDEPACQNAIRSAVDKF---------GGLDVLINNAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEK 192          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 47/192 (24.48%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLID 660
            +K   A+VTG + GIG A+ ++L+  GA +    RNE  LN+  Q+  +    VS    D+ +++  + +++ V   F G ++I++N+AG  +              ++  N +   HV Q   P L             V+G       ++  ++K A++ +T++L  E A+  ++V S++P ++ TP+ +
Sbjct:    4 VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVS---ADVTVKSNIDDMLKAVIDHF-GHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTE 191          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 47/192 (24.48%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLID 660
            +K   A+VTG + GIG A+ ++L+  GA +    RNE  LN+  Q+  +    VS    D+ +++  + +++ V   F G ++I++N+AG  +              ++  N +   HV Q   P L             V+G       ++  ++K A++ +T++L  E A+  ++V S++P ++ TP+ +
Sbjct:    4 VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVS---ADVTVKSNIDDMLKAVIDHF-GHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTE 191          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 67/211 (31.75%), Postives = 100/211 (47.39%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNE----TELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXX-VMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKDSTFLEQAIA 702
            LKG  AL+TGG  GIG AV    A  GA +    ++E     E  +R+++   K L ++G+  + +     E + +TV     G L+IL+NNAG   PK                TNF S +++++ A   LK            +   +  P      ++KGA+N  T+ +A    KD IRVN+VAP  I TPLI      +TF E+ +A
Sbjct:   40 LKGKVALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQEGVKCLLIAGDVGEEEFC--NEAVEKTVKEL--GGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSAIINTTS--INPYVGNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLI-----PATFPEETVA 239          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 57/190 (30.00%), Postives = 85/190 (44.74%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRT 648
            L    ALVT  T GIG A+   LA  GA V   SR +  +++ +   + +GL V+G  C +     REKL+        G ++IL++NA    F               V++ N  ++  + +   P ++            VAG +  P       SK A+  LTKN A E A   IRVN +AP +I+T
Sbjct:   12 LANKVALVTASTDGIGLAIARRLAEDGAHVVISSRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQG-IDILVSNAAVNPFFGN-LMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKT 199          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 53/194 (27.32%), Postives = 90/194 (46.39%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKV 666
            L+G   L+TG   GIG A     A  GA V     ++  L+  ++E +    +V     ++  R Q ++++E V  ++ G +++L+NNAG                 V+  N +  ++V+Q+  P +             V G+   P  +  A+SK  +  +TK  A E A   IRVN+VAP  I TP+ +K+
Sbjct:    3 LEGKVCLITGAASGIGKATTLLFAQEGATVIAGDISKENLDSLVKEAEGLPGKVDPYVLNVTDRDQIKEVVEKVVQKY-GRIDVLVNNAGITRDALLVRMKEEDWDAVINVNLKGVFNVTQMVVPYMIKQRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIETPMTEKL 195          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 53/196 (27.04%), Postives = 91/196 (46.43%), Query Frame = 1
Query:   97 TALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQ---VSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKD 675
            TA++TG T GIG A+   LA  GA +        +  + + + +  GL    V  +  D+   ++   +M  V+ +F G  +IL+NNAG    +            ++  N  S++H  + A P +K              G++A P  S   ++K  +  LTK +A E A+  + VNS+ P  + TPL++K + D
Sbjct:    4 TAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTD-EVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGA-DILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPD 197          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 54/198 (27.27%), Postives = 90/198 (45.45%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGA-IVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKD 675
            L   TA+VTG ++GIG ++  +LA  GA +V   S NE + N+ + E KS G +      D+      + +++   S F   ++IL+NNAG                 V+  N +  ++ ++     +             + GV   P  +   ++K  +  LTK+ A E A   I VN++AP  I T + DK+ KD
Sbjct:    2 LNDKTAIVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEIKSMGRKAIAVKADVSNPEDVQNMIKETLSVFS-TIDILVNNAGITRDNLIMRMKEDEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVGVSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTDKLAKD 198          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 56/195 (28.72%), Postives = 89/195 (45.64%), Query Frame = 1
Query:   70 EKRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRT 648
            E+R  L+   ALVT  T GIG A+   LA  GA V   SR +  +++ +   + +GL V+G  C +     RE+L+  ++    G ++IL++NA    F               ++  N ++   +++   P ++            V      P       SK A+  LTKNLA E A   IRVN +AP +I+T
Sbjct:    7 ERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLV-AMAVNLHGGVDILVSNAAVNPFFGN-IIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKT 199          
The following BLAST results are available for this feature:
BLAST of FC931946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DHRS4_MOUSE1.947e-1330.41Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
BACC2_BACSU3.320e-1330.50Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
Y2049_STAEQ4.336e-1324.48Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES4.336e-1324.48Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
GS39_BACSU1.262e-1231.75General stress protein 39 OS=Bacillus subtilis GN=... [more]
DHRS4_RAT1.262e-1230.00Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
FABG_THEMA1.648e-1227.323-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
BDHA_RHIME1.648e-1227.04D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
FABG_BACSU2.152e-1227.273-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
DHRS4_PIG3.671e-1228.72Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionC34202H05EF PostHarveN Citrus clementina cDNA clone C34202H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931946 ID=FC931946; Name=FC931946; organism=Citrus clementina; type=EST; length=729bp
GAGATAAGATAGGAATGGTTGCTTTTTGGCCTTCTAACCAATAGGGGGAA
AAAAATGTCAGATTTTAGGGAGAAAAGGTGGTCTCTCAAGGGTATGACGG
CCCTTGTCACAGGTGGAACCAAAGGGATCGGATATGCCGTAGTAGAAGAA
CTAGCAGCATTTGGAGCAATAGTTCATACATGTTCCCGTAACGAAACAGA
GCTCAATCAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTCAAGTGAGTG
GCAATGCATGTGACCTGAAAATTAGAGCTCAGCGAGAGAAGCTGATGGAG
ACTGTCTCGTCTCAATTTGATGGCATGCTCAACATCCTTATTAACAATGC
TGGAACCTTCATACCTAAGGAAACCACAGAATTTACCGAGGAGGATTTCT
CAACTGTAATGACTACCAATTTTGAGTCTGCTTATCATGTGTCTCAACTT
GCACACCCCCTCTTAAAATCATCAGGAAATGGAAACATCATATTTATATC
CTCTGTTGCAGGCGTTATTGCTATACCAATGTGTTCCATAGCAGCATCGA
GTAAAGGGGCGATGAATCAACTCACAAAGAACTTGGCATGCGAGTGGGCA
AAAGACAAAATTCGTGTGAATTCAGTTGCACCATGGATCATTAGAACCCC
ACTCATTGATAAAGTATTGAAAGATTCTACGTTTCTGGAACAAGCAATCG
CATGATACTCCGTACTCCTATCCCCGACC
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