FC932042

Overview
NameFC932042
Unique NameFC932042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26A_DANRE (Vacuolar protein sorting-associated protein 26A OS=Danio rerio GN=vps26a PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.320e-79
Identity = 138/221 (62.44%), Postives = 183/221 (82.81%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            SD+ N +EF++LV+ELA PGEL   +++ F F  VEK YESY G NV+LR+F++VT+ RR++D+++E DL V+     P+ N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KI+HMEL +I++E TG  P+   E+ET+ ++EIMDG+P +GE+IPIRLFL G+DLTPT RDVNKK+S RY+L+LVL+DE+ RRYFKQ EI L+R+APE
Sbjct:   80 SDKSNTHEFVNLVKELALPGELTQNRSYDFEFMQVEKPYESYVGANVRLRYFLKVTIVRRLSDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEMTGIGPSTTTETETVAKYEIMDGAPVKGESIPIRLFLAGYDLTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIVLWRKAPE 300          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: V26AB_XENLA (Vacuolar protein sorting-associated protein 26A-B OS=Xenopus laevis GN=vps26a-B PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.660e-79
Identity = 136/221 (61.54%), Postives = 182/221 (82.35%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            +D+ N +EF++LV+ELA PGEL   +++ F F  VEK YESYNG NV+LR+F++VT+ RR+ D+++E DL V+     P+ N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KI+HMEL +I++E TG  P+   E+ET+ ++EIMDG+P +GE+IPIRLF+ G+D TPT RDVNKK+S RY+L+LVL+DE+ RRYFKQ EI L+R+APE
Sbjct:   80 NDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYNGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLASYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETVAKYEIMDGAPVKGESIPIRLFIAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE 300          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26A_RAT (Vacuolar protein sorting-associated protein 26A OS=Rattus norvegicus GN=Vps26a PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.152e-78
Identity = 137/221 (61.99%), Postives = 181/221 (81.90%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            +D+ N +EF++LV+ELA PGEL   +++ F F  VEK YESY G NV+LR+F++VT+ RR+ D+++E DL V+     PE N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KI+HMEL +I++E TG  P+   E+ET+ ++EIMDG+P +GE+IPIRLFL G+D TPT RDVNKK+S RY+L+LVL+DE+ RRYFKQ EI L+R+APE
Sbjct:   80 NDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPEVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE 300          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VPS26_DROME (Vacuolar protein sorting-associated protein 26 OS=Drosophila melanogaster GN=Vps26 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.671e-78
Identity = 130/218 (59.63%), Postives = 182/218 (83.49%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQA 688
            DRGNH+EF  L + LA PG+L+   ++PF+F  VEKQ+E Y G NV+LR+F+R T+ RR++D+ +E D+ V++    PE N+PIKM+VGIEDCLHIEFEY+KSKYHL+D I+G+IYFLLVR+KIKHME++II++E+TG+ P  +NE+ET+ ++EIMDG+P +GE+IPIR+FL G++LTPT RD+NKK+S +Y+L+LVL+D + RRYFKQ EI L+R+A
Sbjct:   78 DRGNHHEFKCLAKALARPGDLIQNNSYPFDFPKVEKQFEVYAGSNVRLRYFLRATIVRRISDITKEVDIAVHTLCSYPEMNNPIKMEVGIEDCLHIEFEYNKSKYHLRDTIIGKIYFLLVRIKIKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRVFLAGYNLTPTMRDINKKFSVKYFLNLVLMDTEDRRYFKQQEITLWRKA 295          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VPS26_CAEEL (Vacuolar protein sorting-associated protein 26 OS=Caenorhabditis elegans GN=vps-26 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 4.794e-78
Identity = 135/225 (60.00%), Postives = 180/225 (80.00%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPEIAPTP 709
            DRGN  +F+SL +ELA PG+L     FPF F +VEK +E+Y G NVKLR+F+RVTV RR+ D+ +E DL V++    P+N+  IKM+VGIEDCLHIEFEY+K+KYHL+DVIVG+IYFLLVR+KIK+ME++I++ E  GS PN + ESET+ +FEIMDG+P RGE+IPIRLFL G+DL P+ RDV KK+S +Y+L+LVL+DE+ RRYFKQ E+ L+R+A ++   P
Sbjct:   80 DRGNQQDFISLTRELARPGDLTQNAQFPFEFNNVEKPFETYMGTNVKLRYFLRVTVIRRLTDLTKELDLVVHALSSYPDNDKSIKMEVGIEDCLHIEFEYNKNKYHLQDVIVGKIYFLLVRIKIKYMEIAILKTEVVGSGPNTFKESETVAKFEIMDGAPVRGESIPIRLFLAGYDLAPSMRDVGKKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRKADKVMRRP 304          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26A_MOUSE (Vacuolar protein sorting-associated protein 26A OS=Mus musculus GN=Vps26a PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.794e-78
Identity = 136/221 (61.54%), Postives = 181/221 (81.90%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            +D+ N +EF++LV+ELA PGEL   +++ F F  VEK YESY G NV+LR+F++VT+ RR+ D+++E DL V+     P+ N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KI+HMEL +I++E TG  P+   E+ET+ ++EIMDG+P +GE+IPIRLFL G+D TPT RDVNKK+S RY+L+LVL+DE+ RRYFKQ EI L+R+APE
Sbjct:   80 NDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE 300          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26A_HUMAN (Vacuolar protein sorting-associated protein 26A OS=Homo sapiens GN=VPS26A PE=1 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 4.794e-78
Identity = 136/221 (61.54%), Postives = 181/221 (81.90%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            +D+ N +EF++LV+ELA PGEL   +++ F F  VEK YESY G NV+LR+F++VT+ RR+ D+++E DL V+     P+ N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KI+HMEL +I++E TG  P+   E+ET+ ++EIMDG+P +GE+IPIRLFL G+D TPT RDVNKK+S RY+L+LVL+DE+ RRYFKQ EI L+R+APE
Sbjct:   80 NDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE 300          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26A_BOVIN (Vacuolar protein sorting-associated protein 26A OS=Bos taurus GN=VPS26A PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.794e-78
Identity = 136/221 (61.54%), Postives = 181/221 (81.90%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            +D+ N +EF++LV+ELA PGEL   +++ F F  VEK YESY G NV+LR+F++VT+ RR+ D+++E DL V+     P+ N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KI+HMEL +I++E TG  P+   E+ET+ ++EIMDG+P +GE+IPIRLFL G+D TPT RDVNKK+S RY+L+LVL+DE+ RRYFKQ EI L+R+APE
Sbjct:   80 NDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE 300          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26A_XENTR (Vacuolar protein sorting-associated protein 26A OS=Xenopus tropicalis GN=vps26a PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.178e-78
Identity = 136/221 (61.54%), Postives = 180/221 (81.45%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            +D+ N +EF++LV+ELA PGEL   + + F F  VEK YESY G NV+LR+F++VT+ RR+ D+++E DL V+     P+ N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KI+HMEL +I++E TG  P+   E+ET+ ++EIMDG+P +GE+IPIRLFL G+D TPT RDVNKK+S RY+L+LVL+DE+ RRYFKQ EI L+R+APE
Sbjct:   80 NDKSNTHEFVNLVKELALPGELTQSRNYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETVAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE 300          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: V26AA_XENLA (Vacuolar protein sorting-associated protein 26A-A OS=Xenopus laevis GN=vps26a-A PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.395e-77
Identity = 135/221 (61.09%), Postives = 180/221 (81.45%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            +D+ N +EF++LV+ELA PGEL   + + F F  VEK YESY G NV+LR+F++VT+ RR+ D+++E DL V+     P+ N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KI+HMEL +I++E TG  P+   E+ET+ ++EIMDG+P +GE+IPIRLF+ G+D TPT RDVNKK+S RY+L+LVL+DE+ RRYFKQ EI L+R+APE
Sbjct:   80 NDKSNTHEFVNLVKELALPGELTQSRNYDFEFMQVEKPYESYIGSNVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETVAKYEIMDGAPVKGESIPIRLFIAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIVLWRKAPE 300          
The following BLAST results are available for this feature:
BLAST of FC932042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VP26A_DANRE3.320e-7962.44Vacuolar protein sorting-associated protein 26A OS... [more]
V26AB_XENLA9.660e-7961.54Vacuolar protein sorting-associated protein 26A-B ... [more]
VP26A_RAT2.152e-7861.99Vacuolar protein sorting-associated protein 26A OS... [more]
VPS26_DROME3.671e-7859.63Vacuolar protein sorting-associated protein 26 OS=... [more]
VPS26_CAEEL4.794e-7860.00Vacuolar protein sorting-associated protein 26 OS=... [more]
VP26A_MOUSE4.794e-7861.54Vacuolar protein sorting-associated protein 26A OS... [more]
VP26A_HUMAN4.794e-7861.54Vacuolar protein sorting-associated protein 26A OS... [more]
VP26A_BOVIN4.794e-7861.54Vacuolar protein sorting-associated protein 26A OS... [more]
VP26A_XENTR8.178e-7861.54Vacuolar protein sorting-associated protein 26A OS... [more]
V26AA_XENLA1.395e-7761.09Vacuolar protein sorting-associated protein 26A-A ... [more]

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Properties
Property NameValue
Genbank descriptionC34204A07EF PostHarveN Citrus clementina cDNA clone C34204A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932042 ID=FC932042; Name=FC932042; organism=Citrus clementina; type=EST; length=714bp
AAGGTGCAATTTATTGGCACGATTGAGATGTTCTGACCGAGGCAACCATT
ATGAATTCCTTTCCCTGGTACAGGAGCTCGCTGCGCCCGGCGAGCTGCTC
CACCCGCAGACCTTCCCTTTCAATTTCAAGAGCGTCGAAAAGCAATACGA
GTCTTACAATGGCATCAACGTTAAGCTGCGCCACTTTGTCCGGGTGACCG
TCTCGCGGCGCATGGCGGACGTTATTCGGGAGAAGGATTTGTGGGTGTAC
TCGTACCGCATGCCACCTGAGAACAACAGCCCTATCAAGATGGACGTTGG
TATTGAGGACTGCCTCCATATCGAATTCGAATATTCCAAATCCAAGTATC
ATCTTAAGGATGTGATTGTTGGCCGTATCTATTTCTTGCTTGTGCGGCTC
AAGATCAAGCATATGGAATTGTCTATCATTCGGCGGGAGACAACAGGATC
ACCGCCAAATCAATATAATGAGAGTGAGACTTTGGTACGCTTTGAGATCA
TGGATGGTTCGCCATCGAGAGGTGAAACTATTCCAATCCGTCTGTTCCTT
GGTGGATTCGACTTGACGCCGACATTCCGCGACGTTAACAAGAAGTACTC
GACAAGGTACTATCTCAGTCTCGTACTGATTGACGAAGATGCCCGTCGCT
ACTTTAAACAGTCCGAAATTGCGCTCTACCGTCAAGCCCCCGAGATCGCC
CCGACGCCCAGATC
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