FC932042

Overview
NameFC932042
Unique NameFC932042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VPS26_ARATH (Vacuolar protein sorting-associated protein 26 OS=Arabidopsis thaliana GN=At4g27690 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 7.164e-74
Identity = 133/217 (61.29%), Postives = 176/217 (81.11%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIRE-KDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYR 682
            DRGN Y+F SLV+EL  PGE+   +T+PF F +VE  YE+YNG+NV+LR+ ++VTV+R  A  I E ++L V +Y   P+ N+ IKM+VGIEDCLHIEFEY+KSKYHLKDVI+G+IYFLLVR+K+K+M+L I RRE+TG+  N + E+ETL +FE+MDG+P RGE+IP+RLFL  +DLTPT R++N K+S +YYL+LVL+DE+ RRYFKQ EI LYR
Sbjct:   80 DRGNFYDFTSLVRELDVPGEIYERKTYPFEFPTVEMPYETYNGVNVRLRYVLKVTVTRGYAGSILEYQELVVRNYAPLPDINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVILGKIYFLLVRIKMKNMDLEIRRRESTGAGANTHVETETLAKFELMDGTPVRGESIPVRLFLAPYDLTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITLYR 296          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VPS26_PLAF7 (Vacuolar protein sorting-associated protein 26 OS=Plasmodium falciparum (isolate 3D7) GN=PFL2415w PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.495e-67
Identity = 118/219 (53.88%), Postives = 169/219 (77.17%), Query Frame = 2
Query:   32 SDRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMA-DVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            +D+ N Y+F S+ ++L  PG L+  + F + F +V+KQ+ESY G NV+LR+FVR+ + +  + ++ +E D  V +  +PPE N+ IKM+VGIEDCLHIEFEY KSKYHLKDV+VG++YFLLVR+KIKHMEL II+ ET+G   N   E+ TL +FEIMDGSP + E IP+RL+L GFDLTPT++++  K+S +YY++L+++DE+ RRYFK+ EI L+R+
Sbjct:   76 NDKANSYDFFSISKDLEPPGFLVESKQFKWKFSAVDKQHESYFGTNVQLRYFVRLNIIKGYSGNIQKEIDFIVQNLCIPPEINNTIKMEVGIEDCLHIEFEYDKSKYHLKDVVVGKVYFLLVRIKIKHMELDIIKMETSGVGKNYTTETVTLSKFEIMDGSPIKSECIPVRLYLSGFDLTPTYKNIQNKFSVKYYINLIIVDEEERRYFKKQEIFLWRK 294          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VPS26_YEAST (Vacuolar protein sorting-associated protein 26 OS=Saccharomyces cerevisiae GN=VPS26 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.936e-43
Identity = 85/134 (63.43%), Postives = 106/134 (79.10%), Query Frame = 2
Query:  281 PIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYR 682
            P+++D+GIE+CLHIEFEY+KS+Y LK+VIVGRIYFLL RL+IKHMELS+I RE++G   +      T +R+EIMDGS  +GETIPIRLFL G+DLTP        ++ + YLSLV+IDED RRYFKQSEI LYR
Sbjct:  246 PVRLDIGIENCLHIEFEYAKSQYSLKEVIVGRIYFLLTRLRIKHMELSLITRESSGLQTSNVMTDSTAIRYEIMDGSSVKGETIPIRLFLSGYDLTPNMS--CNYFNVKNYLSLVIIDEDGRRYFKQSEITLYR 377          

HSP 2 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 2
Query:   53 EFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSY 256
            +FL    +L   GEL H Q+FPF F+ + K+YESY G NV + ++V+VTV R+  D+ + K  WVY Y
Sbjct:  116 QFLCQSYDLCPAGELQHSQSFPFLFRDLSKRYESYKGKNVDVAYYVKVTVMRKSTDISKIKRFWVYLY 183          
The following BLAST results are available for this feature:
BLAST of FC932042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VPS26_ARATH7.164e-7461.29Vacuolar protein sorting-associated protein 26 OS=... [more]
VPS26_PLAF76.495e-6753.88Vacuolar protein sorting-associated protein 26 OS=... [more]
VPS26_YEAST2.936e-4363.43Vacuolar protein sorting-associated protein 26 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34204A07EF PostHarveN Citrus clementina cDNA clone C34204A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932042 ID=FC932042; Name=FC932042; organism=Citrus clementina; type=EST; length=714bp
AAGGTGCAATTTATTGGCACGATTGAGATGTTCTGACCGAGGCAACCATT
ATGAATTCCTTTCCCTGGTACAGGAGCTCGCTGCGCCCGGCGAGCTGCTC
CACCCGCAGACCTTCCCTTTCAATTTCAAGAGCGTCGAAAAGCAATACGA
GTCTTACAATGGCATCAACGTTAAGCTGCGCCACTTTGTCCGGGTGACCG
TCTCGCGGCGCATGGCGGACGTTATTCGGGAGAAGGATTTGTGGGTGTAC
TCGTACCGCATGCCACCTGAGAACAACAGCCCTATCAAGATGGACGTTGG
TATTGAGGACTGCCTCCATATCGAATTCGAATATTCCAAATCCAAGTATC
ATCTTAAGGATGTGATTGTTGGCCGTATCTATTTCTTGCTTGTGCGGCTC
AAGATCAAGCATATGGAATTGTCTATCATTCGGCGGGAGACAACAGGATC
ACCGCCAAATCAATATAATGAGAGTGAGACTTTGGTACGCTTTGAGATCA
TGGATGGTTCGCCATCGAGAGGTGAAACTATTCCAATCCGTCTGTTCCTT
GGTGGATTCGACTTGACGCCGACATTCCGCGACGTTAACAAGAAGTACTC
GACAAGGTACTATCTCAGTCTCGTACTGATTGACGAAGATGCCCGTCGCT
ACTTTAAACAGTCCGAAATTGCGCTCTACCGTCAAGCCCCCGAGATCGCC
CCGACGCCCAGATC
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