FC932081

Overview
NameFC932081
Unique NameFC932081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  325 GERARMASFVGAMAIADLVKTTLGPKGVDKIL-QSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            G  A+  + + A  IA+ V+TTLGPKG+DK+L  S G   ++ VTNDGATIL    + +PAAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+   IHP   I G+ +AAE A+
Sbjct:   21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQ 136          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  325 GERARMASFVGAMAIADLVKTTLGPKGVDKIL-QSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            G  A+  + + A  IA+ V+TTLGPKG+DK+L  S G   ++ VTNDGATIL    + +PAAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+   IHP   I G+ +AAE A+
Sbjct:   21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQ 136          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  325 GERARMASFVGAMAIADLVKTTLGPKGVDKIL-QSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            G  A+  + + A  IA+ V+TTLGPKG+DK+L  S G   ++ VTNDGATIL    + +PAAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+   IHP   I G+ +AAE A+
Sbjct:   21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQ 136          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 58/125 (46.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  295 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKIL-QSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAA 666
            I   + +   G  A+  + +    +A+ V+TTLGPKG+DK+L  S G   ++ +TNDG TIL+   I +PAAK+LV+++K Q+DEVGDGTT+ V++AGELL+EAEKL+   +HP     G+R AA
Sbjct:   10 ILPQDTSRYVGREAQRINILAGKVLAETVRTTLGPKGMDKMLVDSLG---DIVITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAA 131          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 60/125 (48.00%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  301 RDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECA 675
            +++ +  +G  A  A+   A AIA +++T+LGPKG+DK+LQS     +VT+TNDGATIL+   +DN  AK+LV++S+ QD ++GDGTT VVV+AG LL +AEKL+   IHP+    G+ MA+  A
Sbjct:   18 QEKKSRLQGLDAHKANIAAAKAIARILRTSLGPKGMDKMLQSPDG--DVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIA 140          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 60/116 (51.72%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  325 GERARMASFVGAMAIADLVKTTLGPKGVDKIL-QSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAE 669
            GE  R  + + A +IA++VK++LGP G+DK+L    G   +VT+TNDGATILK   +++PAAKVL +++ +QD EVGDGTTSVV++A ELL+ A++L   KIHP + ISG+R+A +
Sbjct:   14 GEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIG---DVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACK 126          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 60/119 (50.42%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  325 GERARMASFVGAMAIADLVKTTLGPKGVDKIL-QSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            G  A+  + + A  IA+ V+TTLGPKG+DK+L  S G   ++ +TNDGATIL    I +PAAK++V+++K QD E GDGTT+ VV+AGELL++AE+L+   IHP   I G+ +AAE A+
Sbjct:   21 GRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQ 136          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 62/114 (54.39%), Postives = 84/114 (73.68%), Query Frame = 1
Query:  325 GERARMASFVGAMAIADLVKTTLGPKGVDKIL-QSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMA 663
            GE  R  + +   AIA++VK++LGP G+DK+L    G   +VTVTNDGATIL    +++PA KVLV++++ QD EVGDGTTSVV++A ELLR A +LV  KIHP T I+G+R+A
Sbjct:   19 GEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIG---DVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLA 129          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25
Identity = 60/129 (46.51%), Postives = 88/129 (68.22%), Query Frame = 1
Query:  295 IFRDEANEEK--GERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECA 675
            + RD+  +E+  G  A  +  + A  I++++K++LGPKG+DK++ S  +  EV VTNDGATIL++  +DN  AK++V +SK QDDE+GDGTT VVVLAG LL +AE+L+   IHP     G+  A + A
Sbjct:   14 VIRDQQAKERLRGIEAHRSHILAAKTISNIMKSSLGPKGMDKMMVS--QDGEVLVTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETACKIA 140          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25
Identity = 58/119 (48.74%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  325 GERARMASFVGAMAIADLVKTTLGPKGVDKIL-QSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            G  A+  + + A  +A+ ++TTLGPKG+DK+L  S G   ++ +TNDGATIL    I +PAAK++V+++K QD E GDGTT+ VV+AGELL++AE+L+   IHP   I G+ +AAE A+
Sbjct:   21 GRDAQRLNILAARIVAETIRTTLGPKGMDKMLVDSLG---DIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKAQ 136          
The following BLAST results are available for this feature:
BLAST of FC932081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
THSA_THEK83.326e-2551.26Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_THEK13.326e-2551.26Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO3.326e-2551.26Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSA_METTH3.326e-2546.40Thermosome subunit alpha OS=Methanobacterium therm... [more]
TCPE1_AVESA3.326e-2548.00T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPA_MACFA3.326e-2551.72T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
THS_PYRAB4.344e-2550.42Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
TCPA_SCHPO4.344e-2554.39T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPE_DICDI5.674e-2546.51T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
THS_DESSY7.410e-2548.74Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34204D10EF PostHarveN Citrus clementina cDNA clone C34204D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932081 ID=FC932081; Name=FC932081; organism=Citrus clementina; type=EST; length=679bp
GAAACCTACGACAGCTACTCCGGTCTTTTAGTTATTGACGTTTGACTGAC
AAAGTCAATCTTTTGCGCGTGTAACAGAGGTAGATTCTATGGATAAAAAT
ACACACTGCCACACTGAATCAAAAAACAACTGGTAGAAAAGCGAAGCCTA
AAACACAACACTCTTCAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCA
GGGTCGAACATCACCGGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGT
TTTAGTTGCCTTCATTTACATTTTCTTCGATGGGGGTAGAGAGAATTTTT
AGAGATGAAGCTAACGAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATT
TGTTGGTGCAATGGCAATTGCTGACTTGGTTAAGACAACCTTAGGGCCAA
AGGGAGTGGATAAAATTCTACAGTCAACCGGCAGAGGACGTGAAGTCACT
GTTACGAATGACGGGGCCACTATACTTAAGTCCCCACACATTGATAATCC
AGCTGCTAAAGTCCTTGTTGACATCTCTAAGGTTCAGGATGATGAAGTTG
GTGATGGGACAACTTCAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAG
GCAGAGAAGCTGGTGGCTGCTAAGATTCACCCAATGACCCATATATCAGG
TTTCCGGATGGCAGCTGAATGCGCTCGCG
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