FC932181

Overview
NameFC932181
Unique NameFC932181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 91/171 (53.22%), Postives = 113/171 (66.08%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            I +D +  IG TPLV LN I +G    I AK+E   P  SVK RIG +MI DAE+KG +     + IE TSGNTGI LA++AAA+ Y L + MP SMS+ERR +L + GA L+LT+   GMKGA+ KA EI       Y +L+QFENPANP+IH +TTG EI K T G ID
Sbjct:    4 IYEDNSFTIGNTPLVRLNNIGNG---NILAKIESRNPSFSVKCRIGANMIWDAEKKGRLNKNIEI-IEATSGNTGIALAYVAAARNYSLTLIMPDSMSIERRKLLKSLGAHLILTNGKHGMKGAISKANEIVSLNTKRYLLLKQFENPANPEIHQKTTGPEIWKDTKGNID 170          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.093e-34
Identity = 82/163 (50.31%), Postives = 106/163 (65.03%), Query Frame = 1
Query:  199 ELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKI 687
            + IG TPLV L R+     + +  KLE   P  SVKDR   SMI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR  + A+GAEL+L    +GM+GA   A E+ ++     +L QF NP NP  HY TTG EI + TGG+I
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRI 166          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.346e-34
Identity = 78/174 (44.83%), Postives = 109/174 (62.64%), Query Frame = 1
Query:  178 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            +I  ++ + IG TPLV +N++       + AK E      SVKDRIG+ MI DAEE G I+ G++ LIEPTSGNTGIGLA  AA KGY++IIT+P  MS E+  VL A GAE++ T         +  +  A+++  + PNS++L Q+ NP+NP  HY+ T  E+ +   GKID
Sbjct:   31 LIMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSHILDQYGNPSNPLAHYDGTAEELLEQCEGKID 203          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.653e-33
Identity = 81/163 (49.69%), Postives = 104/163 (63.80%), Query Frame = 1
Query:  199 ELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKI 687
            + IG TPLV L R+     + I  KLE   P  SVKDR   SMI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR  + A+GAEL+L    +GM+GA   A  + ++     +L QF NP NP  HY TTG EI + T G+I
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQTSGRI 166          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.653e-33
Identity = 84/175 (48.00%), Postives = 107/175 (61.14%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            I  D+ + IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G +RPG+++ IEPTSGNTGIGLA  AA KGYR II MP  MSLE+  VL A GAE+V T   AR    +  V  A  ++ + PNS++L Q+ N +NP  HY+TT  EI +   GK+D
Sbjct:   76 ILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQEIPNSHILDQYRNASNPLAHYDTTAEEILQQCDGKLD 249          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.317e-32
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            I  D+   IG TP+V +NRI    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA KGYR II MP  MS+E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+ T  EI +   GK+D
Sbjct:   73 ILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKVD 246          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 81/175 (46.29%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            I  D+   IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA KGYR II MP  MS+E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+ T  EI +   GK+D
Sbjct:   73 ILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKLD 246          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 80/175 (45.71%), Postives = 107/175 (61.14%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            I  D+ + IG TP++ +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA +GYR II MP  MS E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+TT  EI +   GK+D
Sbjct:   76 ILPDILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILRQCDGKLD 249          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 81/175 (46.29%), Postives = 107/175 (61.14%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            I  D+ + IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA +GYR II MP  MS E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+TT  EI +   GK+D
Sbjct:   76 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 249          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.901e-31
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 1
Query:  193 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKI 687
            + + +G TPLV L R+       +  KLE   P  SVKDR   SMI  AE +G IRPG++ LIE TSGNTGI LA  AA KGY++I+ MP + + ER+  + A+GAEL+L     GM+GA   A++++ +     VL QF N  NP+ HY +TG EI + TGG I
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGARDLADKLQ-REGRGKVLDQFANGDNPEAHYHSTGPEIWQQTGGSI 170          
The following BLAST results are available for this feature:
BLAST of FC932181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_BUCAP3.029e-3753.22Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CYSM_ECOLI4.093e-3450.31Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CBS_DICDI5.346e-3444.83Cystathionine beta-synthase OS=Dictyostelium disco... [more]
CYSM_SALTY2.653e-3349.69Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CBS_RABIT2.653e-3348.00Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CBS_RAT1.317e-3246.86Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_MOUSE6.535e-3246.29Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CBS_MACFA6.535e-3245.71Cystathionine beta-synthase OS=Macaca fascicularis... [more]
CBS_HUMAN6.535e-3246.29Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CYSM_PSEAE1.901e-3146.06Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC34205E04EF PostHarveN Citrus clementina cDNA clone C34205E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932181 ID=FC932181; Name=FC932181; organism=Citrus clementina; type=EST; length=694bp
GATATAAGCAAAATCATCGTAACGCATAAACATAATTATTATCAGGAGAT
TTATTTGTTTTTCAATTTTCTACTGTTTTCCAGCTGCCTTGACATTGTTT
ACGATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTGTAACTTGAAAAAAA
GAAAAAAAAATGGTGGAGGAGAAGTCCGTGATTGCGAAAGATGTCACTGA
ATTGATTGGTAAAACACCATTGGTGTATCTCAACCGCATTGTGGATGGTT
GCGTTGCTAGAATTGCTGCCAAGCTGGAGATGATGAAACCCTGCTCTAGC
GTCAAAGATAGAATTGGATACAGTATGATCGCTGATGCAGAGGAGAAGGG
TCTCATTAGACCAGGCGAGAGTGTCCTGATTGAGCCTACCAGCGGTAATA
CTGGCATAGGGTTGGCATTCATGGCAGCTGCTAAGGGTTACAGACTTATA
ATTACCATGCCTGCTTCAATGAGTCTTGAAAGAAGAATGGTTCTCCTAGC
TTTTGGAGCTGAGCTTGTGCTCACTGATCCTGCCAGGGGCATGAAGGGAG
CTGTTCAGAAGGCAGAAGAGATAAGGGACAAGACACCGAATTCCTATGTC
CTTCAGCAGTTTGAAAACCCAGCAAACCCAAAGATCCACTACGAGACTAC
CGGAACAGAGATCCGGAAAGGCACCGGTGGTAAGATTGATGCCC
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