FC932181

Overview
NameFC932181
Unique NameFC932181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.901e-31
Identity = 74/165 (44.85%), Postives = 102/165 (61.82%), Query Frame = 1
Query:  190 DVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRK 669
            +V +L+G TPL+ L ++    G   +I AKLE+  P  S+KDRI  SM+ +AE  G I P  S LIEPTSGNTGIGLA + A KGYR IIT+P  MS E+  VL A GAE++ T  A      +  +  A+++  + P + +L Q+ N  NP+ HY  TG EI++
Sbjct:   13 NVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEKEIPGAVILDQYNNMMNPEAHYFGTGREIQR 177          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 71/169 (42.01%), Postives = 102/169 (60.36%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKI 687
            +  D+TELIG TPL+ L          + AKLEMM P  S+KDR+G  +I DA + G ++PG  V+IE T+GNTGIGLA  A   G + I  +P   S E++ ++ A GA ++ T    GM+GA+QKA ++  +  NSY + QF+N  NP  +Y+T G E+ +   G I
Sbjct:    3 VITDITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPG-GVIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYYKTLGPEMWEALDGNI 170          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 76/163 (46.63%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  193 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGG 681
            + + +G TPLV L R+       +  KLE   P  SVKDR   SMI  AE +G I PG++ LIE TSGNTGI LA  AA KGYR+I+ MP + S ER+  + A+GAEL+      GM+GA   AE ++ +     VL QF N  NP+ HY +TG EI + TGG
Sbjct:    8 IADCVGNTPLVRLQRMAGNTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELISVSKDDGMEGARDLAERMQAE-GRGKVLDQFANGDNPEAHYTSTGPEIWRQTGG 168          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 73/170 (42.94%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            + + V+ELIG TP+++L +        + AK E + P  S+KDR  + MI DA +   I   ++ ++E TSGNTGI LA + A  G + I  MP SMSLERR ++  FGA L LT    GMKGAV KA EI   TPNS+++ QFEN +N   H + T  EI +    ++D
Sbjct:    3 VHEKVSELIGNTPIIHLKKFG----INVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQ-DTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILRDLDNELD 167          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = 1
Query:  193 VTELIGKTPLVYLNRIVDGCV---ARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGTEIRKGTGGKI 687
            + +L+G TPLV + + +   +     I AKLE   P  SVKDR   SM  DA ++GLI+ G+ V+I+ TSGNTGI LA + AA G  + + MPA++S ER+ ++ AFGA+L LTDP  G  GA+    E+  K P  YV L Q+ NPAN K H+ +TG EI   T G+I
Sbjct:   25 ILKLVGNTPLVRVKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKYVYLDQYNNPANWKAHFYSTGIEIWNQTKGRI 192          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 73/162 (45.06%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  199 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEI 663
            + +G TPLV L R+        DG   R+ AKLE   P  S+KDR    MI  AE  GL+RPG ++L EPTSGNTGI LA  A  KGYRLI  MP + S+ERR +L  +GA+++ +    G   AV  A+E+    P+  +L Q+ NPAN   HY  TG E+
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPEL 169          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 73/162 (45.06%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  199 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEI 663
            + +G TPLV L R+        DG   R+ AKLE   P  S+KDR    MI  AE  GL+RPG ++L EPTSGNTGI LA  A  KGYRLI  MP + S+ERR +L  +GA+++ +    G   AV  A+E+    P+  +L Q+ NPAN   HY  TG E+
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPEL 169          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK_EMENI (Cysteine synthase OS=Emericella nidulans GN=cysB PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 74/170 (43.53%), Postives = 100/170 (58.82%), Query Frame = 1
Query:  193 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKIDA 693
            +TE IG TPL+ L R+ +   + I AK E   P  SVKDR    ++ DAEE+GL++PG +V +E T+GNTGIGLA +  +KGY+L+I MP + S  +  +L   GAE V   PA      +    KA    +   N+    QF+N AN + H ETTG EI   TGGK+DA
Sbjct:   36 LTEAIGNTPLIRLKRLSEETGSNILAKAEFQNPGGSVKDRAALYVVKDAEERGLLKPGGTV-VEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAE-VYPVPAVAFDNPENYNHKARRHAESLDNAVWTNQFDNTANRRAHIETTGPEIWAQTGGKLDA 203          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK1_SCHPO (Cysteine synthase 1 OS=Schizosaccharomyces pombe GN=cys11 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 68/164 (41.46%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  205 IGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL--VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            IG+TPL+ LN + +     I AK E   P  SVKDR  Y ++ DAE+KG +  G   ++E T+GNTGIGLA +A A+GY+ +I MP + S  +   L   GAE+  V   P         +A    + TPN+    QF+N AN   HYETTG EI   T G +D
Sbjct:   21 IGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRG-GTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTKGTVD 183          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 71/177 (40.11%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  193 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKG-LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL------VLTDPARGMKGAVQKAEEIRDKTPN---SYVLQQFENPANPKIHYETTGTEIRKGTGGKIDA 693
            V ELIG TPLV +  +       I AKLE+  P  S KDR+  ++I  AEE G L+R     + E TSG+TGI +A +  A GYR  I++P   SLE+  +L + GA +       + DP + +  A +   E++ K+ N   +    QFEN AN K+HY+TTG EI   T G IDA
Sbjct:   49 VEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELK-KSGNGIRAVFADQFENEANWKVHYQTTGPEIAHQTKGNIDA 224          
The following BLAST results are available for this feature:
BLAST of FC932181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CBS_YEAST1.901e-3144.85Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
MCCA_BACSU7.226e-3142.01O-acetylserine dependent cystathionine beta-syntha... [more]
CYSM_PSESY2.102e-3046.63Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
CYSM_CAMJE2.746e-3042.94Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_AQUAE2.746e-3045.56Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]
CYSM_MYCTU1.968e-2845.06Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO1.968e-2845.06Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSK_EMENI1.666e-2743.53Cysteine synthase OS=Emericella nidulans GN=cysB P... [more]
CYSK1_SCHPO1.724e-2441.46Cysteine synthase 1 OS=Schizosaccharomyces pombe G... [more]
CYSK_YEAST1.117e-2340.11Putative cysteine synthase OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionC34205E04EF PostHarveN Citrus clementina cDNA clone C34205E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932181 ID=FC932181; Name=FC932181; organism=Citrus clementina; type=EST; length=694bp
GATATAAGCAAAATCATCGTAACGCATAAACATAATTATTATCAGGAGAT
TTATTTGTTTTTCAATTTTCTACTGTTTTCCAGCTGCCTTGACATTGTTT
ACGATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTGTAACTTGAAAAAAA
GAAAAAAAAATGGTGGAGGAGAAGTCCGTGATTGCGAAAGATGTCACTGA
ATTGATTGGTAAAACACCATTGGTGTATCTCAACCGCATTGTGGATGGTT
GCGTTGCTAGAATTGCTGCCAAGCTGGAGATGATGAAACCCTGCTCTAGC
GTCAAAGATAGAATTGGATACAGTATGATCGCTGATGCAGAGGAGAAGGG
TCTCATTAGACCAGGCGAGAGTGTCCTGATTGAGCCTACCAGCGGTAATA
CTGGCATAGGGTTGGCATTCATGGCAGCTGCTAAGGGTTACAGACTTATA
ATTACCATGCCTGCTTCAATGAGTCTTGAAAGAAGAATGGTTCTCCTAGC
TTTTGGAGCTGAGCTTGTGCTCACTGATCCTGCCAGGGGCATGAAGGGAG
CTGTTCAGAAGGCAGAAGAGATAAGGGACAAGACACCGAATTCCTATGTC
CTTCAGCAGTTTGAAAACCCAGCAAACCCAAAGATCCACTACGAGACTAC
CGGAACAGAGATCCGGAAAGGCACCGGTGGTAAGATTGATGCCC
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