FC932201

Overview
NameFC932201
Unique NameFC932201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10A_SCHPO (40S ribosomal protein S10-A OS=Schizosaccharomyces pombe GN=rps10a PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 EIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 193
            E+ VPNLQVIK  QS  SR Y++  + W  +Y+ LTN+G+E+LR YL+LP+E+VPAT K+  +P
Sbjct:   34 EVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRP 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10B_YEAST (40S ribosomal protein S10-B OS=Saccharomyces cerevisiae GN=RPS10B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.912e-13
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    2 EIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPA 196
            EID  NL VIK +QS  S+ YV+  F+W +YY+ LT +G+E+LR YLNLP  IVP T  +   P+
Sbjct:   34 EIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPS 98          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10A_YEAST (40S ribosomal protein S10-A OS=Saccharomyces cerevisiae GN=RPS10A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 2
Query:    2 EIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 193
            EID  NL VIK +QS  S+ YV+  F+W +YY+ LT +G+E+LR YLNLP  IVP T  +   P
Sbjct:   34 EIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNP 97          
The following BLAST results are available for this feature:
BLAST of FC932201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS10A_SCHPO3.538e-1453.1340S ribosomal protein S10-A OS=Schizosaccharomyces... [more]
RS10B_YEAST3.912e-1350.7740S ribosomal protein S10-B OS=Saccharomyces cerev... [more]
RS10A_YEAST5.109e-1351.5640S ribosomal protein S10-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC34205G01EF PostHarveN Citrus clementina cDNA clone C34205G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932201 ID=FC932201; Name=FC932201; organism=Citrus clementina; type=EST; length=598bp
AGAAATCGATGTTCCAAACCTGCAGGTGATTAAGCTGATGCAGAGCTTCA
AATCTAGGGAGTATGTTCGTGAGACATTTGCGTGGATGCACTATTATTGG
TACCTTACGAATGATGGGATTGAGTTTTTGAGGACTTACCTCAATCTTCC
ATCAGAAATTGTTCCTGCTACCTTGAAGAAATCCGCTAAGCCAGCTGGTC
GCCCGATGGGTGGACCTGGTGGTGATCGTCCAAGGGGCCCACCTCGTTTT
GATGGAGACCGACCGAGGTTTGGTGACCGTGAAGGGTACCGTGGTGGTCC
TCGTGGTGGTGACTTTGGTGGTGAGAAAGGTGGAGCCCCTGCTGATTTCC
AGCCATCCTTCAGGGGTTCTGGTGGAAGACCTGGTTTTGGTCGCGGAGGT
GGAGGCTATGGTGCAGCTCCATCAGGTTCAGGATTTCCTTGAAGTTAAGG
CCGGTTTGCTTAGTTCATGTTTGCCCCAAATTAGTGTTTCAAGTCTTTAG
AACAAGTCTAATGCCTTTGTTGAATTTTCTATAGTATTTCTGTAAGCTTT
AAAGTACAATATTAAGTTCATTATGAGATCTTCAGTTTTTCCTCAAAA
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