FC932215
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.004e-48 Identity = 94/184 (51.09%), Postives = 125/184 (67.93%), Query Frame = 2 Query: 95 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEN 646 K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK PS G HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ G K+C +GRL+SEVGW Y D + +LE++RK +S Y+ K K A A+ + N Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVN 189
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.733e-46 Identity = 93/191 (48.69%), Postives = 127/191 (66.49%), Query Frame = 2 Query: 95 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERK----KQLNKLRAKAEKVAEENLAL 655 K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK PS G HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ K+C +GRL+SEVGW Y + + +LE++RK +S Y+ K K +N AK + E LA+ Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINV--AKTKSSVNEKLAV 194
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.039e-45 Identity = 89/179 (49.72%), Postives = 120/179 (67.04%), Query Frame = 2 Query: 95 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 631 K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+ FL MNT + G H R+P+KIFWR VRGM+PHKT +EGVPAPYDKVKR+V+P AL+V++L K+ +L RL+ EVGW Y + +LE +RK+RS Y + + R +A K Sbjct: 5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3) HSP 1 Score: 182.57 bits (462), Expect = 1.772e-45 Identity = 88/182 (48.35%), Postives = 120/182 (65.93%), Query Frame = 2 Query: 101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEN 646 VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG R K+KY FLRK + GP HFRAP++IF++ +RGM+ HKT +EG+P PYDK KR+V+P AL+VLRL+ G K+ LG+L++ VGW Y D + +LE KRK S Y +K+ K A A A E+ Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAES 188
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3) HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45 Identity = 86/182 (47.25%), Postives = 119/182 (65.38%), Query Frame = 2 Query: 101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEN 646 VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG R K+KY FLRK + GP HFRAP++I ++ +RGM+ HKT +EG+P PYDK KR+V+P AL+VLRL+ G K+ LG+L++ VGW Y D + +LE KRK RS Y +K+ K + A A E+ Sbjct: 6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASES 187
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41 Identity = 81/135 (60.00%), Postives = 100/135 (74.07%), Query Frame = 2 Query: 101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRL 505 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K LGRL Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19 Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 341 MIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEN 646 M+ HKT ++G+P PYDK KRMV+P ALKV+RL+ K LLGR A EV W Y LE+KRKE++++ Y +KKQL +LR +AEK ++N Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEKNVKKN 102
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13 Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 2 Query: 101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVG 520 ++++ H+LGRLAS+V+K+LL G++V+ + E+I ++G KY + + + + P GP + R P IF RTVRGM+P+K Y G+P + + + IPDA K ++KG + LG ++ +G Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLG 140
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12 Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = 2 Query: 104 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGW 523 V+DA H+LGRL+S +AK LLNG+++V V E+ ++G + M + R+ K GP R P +IF RTVRGM+P K+ + GVP + I DAL + ++ K K+ L ++ +G+ Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12 Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 2 Query: 95 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVG 520 K V+DA+ +LGRLAS VAK+LL+G +KV + E+ +SG +Y R R+R T+ GP + P +I RT+RGM+P+K Y GVP + + IPDA +RL ++ LG ++ ++G Sbjct: 3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140 The following BLAST results are available for this feature:
BLAST of FC932215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932215 ID=FC932215; Name=FC932215; organism=Citrus clementina; type=EST; length=694bpback to top |