FC932215

Overview
NameFC932215
Unique NameFC932215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.004e-48
Identity = 94/184 (51.09%), Postives = 125/184 (67.93%), Query Frame = 2
Query:   95 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEN 646
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G K+C +GRL+SEVGW Y D + +LE++RK +S   Y+ K    K  A A+  +  N
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVN 189          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.733e-46
Identity = 93/191 (48.69%), Postives = 127/191 (66.49%), Query Frame = 2
Query:   95 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERK----KQLNKLRAKAEKVAEENLAL 655
            K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+   K+C +GRL+SEVGW Y + + +LE++RK +S   Y+ K    K +N   AK +    E LA+
Sbjct:    6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINV--AKTKSSVNEKLAV 194          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.039e-45
Identity = 89/179 (49.72%), Postives = 120/179 (67.04%), Query Frame = 2
Query:   95 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 631
            K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+  FL   MNT  + G  H R+P+KIFWR VRGM+PHKT            +EGVPAPYDKVKR+V+P AL+V++L    K+ +L RL+ EVGW Y   + +LE +RK+RS   Y +   +   R +A K
Sbjct:    5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.772e-45
Identity = 88/182 (48.35%), Postives = 120/182 (65.93%), Query Frame = 2
Query:  101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEN 646
            VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG   R K+KY  FLRK      + GP HFRAP++IF++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G K+  LG+L++ VGW Y D + +LE KRK  S   Y +K+   K  A A   A E+
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAES 188          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 86/182 (47.25%), Postives = 119/182 (65.38%), Query Frame = 2
Query:  101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEN 646
            VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG   R K+KY  FLRK      + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G K+  LG+L++ VGW Y D + +LE KRK RS   Y +K+   K  + A   A E+
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASES 187          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 81/135 (60.00%), Postives = 100/135 (74.07%), Query Frame = 2
Query:  101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRL 505
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K   LGRL
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  341 MIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEN 646
            M+ HKT            ++G+P PYDK KRMV+P ALKV+RL+   K  LLGR A EV W Y      LE+KRKE++++ Y +KKQL +LR +AEK  ++N
Sbjct:    1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEKNVKKN 102          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 2
Query:  101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVG 520
            ++++   H+LGRLAS+V+K+LL G++V+ +  E+I ++G       KY + + +   + P   GP + R P  IF RTVRGM+P+K             Y G+P  +   + + IPDA K   ++KG +   LG ++  +G
Sbjct:    4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLG 140          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  104 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGW 523
            V+DA  H+LGRL+S +AK LLNG+++V V  E+  ++G    + M + R+  K        GP   R P +IF RTVRGM+P K+            + GVP      +   I DAL + ++ K  K+  L  ++  +G+
Sbjct:   18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 2
Query:   95 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVG 520
            K  V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R+R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + IPDA   +RL    ++  LG ++ ++G
Sbjct:    3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140          
The following BLAST results are available for this feature:
BLAST of FC932215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RL16A_SCHPO1.004e-4851.0960S ribosomal protein L16-A OS=Schizosaccharomyces... [more]
RL16C_SCHPO2.733e-4648.6960S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_DICDI1.039e-4549.7260S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL16A_YEAST1.772e-4548.3560S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16B_YEAST8.792e-4547.2560S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL13A_PIG5.897e-4160.0060S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13AX_HUMAN1.670e-1947.06Putative 60S ribosomal protein L13a-like MGC87657 ... [more]
RLSX_METTH3.050e-1332.62Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_ARCFU1.977e-1233.5750S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METAC3.372e-1234.9750S ribosomal protein L13P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionC34205H03EF PostHarveN Citrus clementina cDNA clone C34205H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932215 ID=FC932215; Name=FC932215; organism=Citrus clementina; type=EST; length=694bp
GGAGAGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAG
AGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGA
GTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGT
GGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAG
AGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGG
TTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTT
TCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGC
ATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAA
GGGGTCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGC
TCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGCACTGCTTGTTAGGTC
GCCTGGCATCTGAGGTTGGATGGAATTATTATGACACCATCAGGGAGCTT
GAGAAGAAGAGAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAAGAAGCA
GCTCAACAAACTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGAACTTGG
CTCTCAATTGGACATCCTTGCTCCTGTCAATATTGATCAGTTAG
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