FC932230

Overview
NameFC932230
Unique NameFC932230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_CHRVO (Fumarate hydratase class II OS=Chromobacterium violaceum GN=fumC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.363e-34
Identity = 79/150 (52.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL +F I  E+  MP  ++ A   +K+  A+ N   G LD A   AI  AA EV  G+ +  FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RG  ++VHPND VN  QSSND FPT MH+AAA     RL+P+L +L ++L SK+
Sbjct:   29 RSLAHFRISSEK--MPPELILALARVKRACAEANRGLGKLDDAKAAAIAGAADEVLAGRHDGEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGRRGPGRLVHPNDDVNLGQSSNDIFPTAMHVAAATQVKERLLPSLDLLRHALESKA 176          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_METAC (Fumarate hydratase class II OS=Methanosarcina acetivorans GN=fumC PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.270e-33
Identity = 80/150 (53.33%), Postives = 100/150 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL +F IG +   MP+ +  A+G +KK AA VN   G+ P    + I + A EV  GKL+  FPL VWQTGSGTQSNMN NEVI+NRA +++G   G K  VHPND VN SQSSNDTFPT MHIA     ++RLIP + VL  S+ +K+
Sbjct:   40 RSLIHFSIGDDY--MPKEVYHAYGYVKKAAALVNEAAGIIPPWKAELIARVADEVIAGKLDSEFPLYVWQTGSGTQSNMNVNEVISNRAIQLVGGSLGSKHPVHPNDDVNMSQSSNDTFPTAMHIATVLEFSNRLIPAVTVLEESIWAKA 187          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_HAEIN (Fumarate hydratase class II OS=Haemophilus influenzae GN=fumC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.658e-33
Identity = 80/150 (53.33%), Postives = 97/150 (64.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQ-AAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RS  NF IG     MP  I+ AFG LKK AA  N + G+ P   + ++  A  E+   KL+D FPLV+WQTGSGTQSNMN NEV+ANRA  + G K GEK I+HPND VN+SQSSNDTFPT MHIAA        IP ++ L  +  +KS
Sbjct:   27 RSRNNFKIGPAAS-MPHEIIEAFGYLKKAAAFANHDLGVLPLEKRDLIALACDEILANKLDDQFPLVIWQTGSGTQSNMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTFPTAMHIAAYKKVVEHTIPCVERLQKTFAAKS 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_CHLCV (Fumarate hydratase class II OS=Chlamydophila caviae GN=fumC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.824e-33
Identity = 74/137 (54.01%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   37 ERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            E MP+ ++RA  ++K+CAAK N + G LD      I+ AA E+ EG   +HFPL VWQTGSGTQSNMN NEVIAN A +  G   G K  +HPNDHVN+SQSSND FPT MHIAA      +LIP +  L  +L +K
Sbjct:   35 EVMPKEVIRALVLIKQCAAKANHDLGFLDSKYCDMIVSAASEILEGGFEEHFPLKVWQTGSGTQSNMNVNEVIANLAIQRHGGVVGSKTPIHPNDHVNKSQSSNDVFPTAMHIAAVINLKKKLIPAMDHLQRALDAK 171          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_STAAR (Fumarate hydratase class II OS=Staphylococcus aureus (strain MRSA252) GN=fumC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.301e-33
Identity = 74/148 (50.00%), Postives = 97/148 (65.54%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L     ++ +HPND VN+SQSSNDTFPT MH+A      ++L P LK+L N+L  K
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHHSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEK 172          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_STAAC (Fumarate hydratase class II OS=Staphylococcus aureus (strain COL) GN=fumC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.301e-33
Identity = 74/148 (50.00%), Postives = 98/148 (66.22%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A      ++L P LK+L N+L  K
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAAIANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEK 172          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 8.229e-33
Identity = 75/149 (50.34%), Postives = 99/149 (66.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF I G         VRA G++KK AA+ N + GL D     AI+ AA EV  G+ +D FP+ V+QTGSGT SNMNANEVIANRAAE+LG + G+++VHPNDHVN  QSSND  PT MH+A+ +   + + P L+ L   L  K+
Sbjct:   29 RAIENFPISGIA--FGRRFVRALGVVKKAAAQANRDLGLVDDERADAIVAAADEVIAGEHDDQFPVDVFQTGSGTSSNMNANEVIANRAAELLGEEIGDRVVHPNDHVNYGQSSNDVIPTAMHVASLDALVNDVKPGLETLAAELDDKA 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_STAAW (Fumarate hydratase class II OS=Staphylococcus aureus (strain MW2) GN=fumC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.404e-32
Identity = 74/148 (50.00%), Postives = 98/148 (66.22%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A      ++L P LK+L N+L  K
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEK 172          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_STAAS (Fumarate hydratase class II OS=Staphylococcus aureus (strain MSSA476) GN=fumC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.404e-32
Identity = 74/148 (50.00%), Postives = 98/148 (66.22%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A      ++L P LK+L N+L  K
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEK 172          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_HELPY (Fumarate hydratase class II OS=Helicobacter pylori GN=fumC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.404e-32
Identity = 77/150 (51.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL-GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL+NF IG   E+MP+ ++ AF  LK+  A VN + G L     +AI++A   + +G+L   FPL +WQTGSGTQ+NMN NEVIAN+A EIL G+ R +K++HPND VN SQSSNDTFPT MHI +      RL+P+L+ L  +   KS
Sbjct:   27 RSLENFKIG--TEKMPKELIGAFAKLKRSLAVVNHKLGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFREKKLIHPNDDVNMSQSSNDTFPTAMHIVSVLEITHRLLPSLENLLKTFKEKS 174          
The following BLAST results are available for this feature:
BLAST of FC932230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_CHRVO4.363e-3452.67Fumarate hydratase class II OS=Chromobacterium vio... [more]
FUMC_METAC1.270e-3353.33Fumarate hydratase class II OS=Methanosarcina acet... [more]
FUMC_HAEIN1.658e-3353.33Fumarate hydratase class II OS=Haemophilus influen... [more]
FUMC_CHLCV4.824e-3354.01Fumarate hydratase class II OS=Chlamydophila cavia... [more]
FUMC_STAAR6.301e-3350.00Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAC6.301e-3350.00Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_HALSA8.229e-3350.34Fumarate hydratase class II OS=Halobacterium salin... [more]
FUMC_STAAW1.404e-3250.00Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAS1.404e-3250.00Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_HELPY1.404e-3251.33Fumarate hydratase class II OS=Helicobacter pylori... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206A06EF PostHarveN Citrus clementina cDNA clone C34206A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932230 ID=FC932230; Name=FC932230; organism=Citrus clementina; type=EST; length=446bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAAATGGAAACAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGT
back to top