FC932230

Overview
NameFC932230
Unique NameFC932230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_MYCTU (Fumarate hydratase class II OS=Mycobacterium tuberculosis GN=fumC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.236e-29
Identity = 73/149 (48.99%), Postives = 97/149 (65.10%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF I G      +  +RA G+LK   A+VN + GL  P    AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA      +G   +HPND VN SQSSNDTFPT  HIAA     + LIP L+ LH++L +K+
Sbjct:   34 RAVENFPISGRGLERTQ--IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKA 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_MYCBO (Fumarate hydratase class II OS=Mycobacterium bovis GN=fumC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.236e-29
Identity = 73/149 (48.99%), Postives = 97/149 (65.10%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF I G      +  +RA G+LK   A+VN + GL  P    AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA      +G   +HPND VN SQSSNDTFPT  HIAA     + LIP L+ LH++L +K+
Sbjct:   34 RAVENFPISGRGLERTQ--IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKA 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_CORGL (Fumarate hydratase class II OS=Corynebacterium glutamicum GN=fumC PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.236e-29
Identity = 74/149 (49.66%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF I G      +  +RA G+LK   A+VN + G LD     AI+ A +E+A GK +  FP+ V+QTGSGT SNMN NEVIA+ A      K     VHPNDHVN  QSSNDTFPT  H+AA     + LIP LKVLH SL  K+
Sbjct:   34 RAVENFPISGRGLESAQ--IRAMGLLKAACAQVNKDSGALDAEKADAIIAAGKEIASGKHDAEFPIDVFQTGSGTSSNMNTNEVIASIA------KANGVEVHPNDHVNMGQSSNDTFPTATHVAATEAAVNDLIPGLKVLHESLAKKA 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_COREF (Fumarate hydratase class II OS=Corynebacterium efficiens GN=fumC PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 9.415e-29
Identity = 74/149 (49.66%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF I G      +  +RA G+LK   A+VN + G LD A   AI+ A +E+A GK +  FP+ V+QTGSGT SNMN NEVIA+ A      K     VHPND VN  QSSNDTFPT  H+AA     + LIP LKVLH SL  K+
Sbjct:   34 RAVENFPISGRGLESAQ--IRAMGLLKAACAQVNKDSGALDAAKADAIIAAGKEIATGKHDAEFPIDVFQTGSGTSSNMNTNEVIASIA------KANGTEVHPNDDVNMGQSSNDTFPTATHVAATEAAVNDLIPGLKVLHESLAKKA 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFT (Fumarate hydratase class II OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=fumC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.151e-26
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF I G    MP+  + A G +K  AAKVN E GL P ++ K I  AA +VA G+ +  FP+ ++QTGSGT SNMNANEVIA      L  +  +  +HPNDHVN  QSSND  PT + I+A      RL+P LK L   ++ ++
Sbjct:   35 RAIENFPISGRS--MPQGFIHALGFIKAAAAKVNAELGLLPKSMAKEIEAAALDVAAGRYDAEFPVDIYQTGSGTSSNMNANEVIAT-----LAMRATKGPIHPNDHVNLGQSSNDVVPTAIRISATLAVQGRLLPALKHLRKMINKRA 176          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFA (Fumarate hydratase class II OS=Xylella fastidiosa GN=fumC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.151e-26
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF I G    MP+  + A G +K  AAKVN E GL P  + K I  AA +VA G+ +  FP+ ++QTGSGT SNMNANEVIA      L  +  ++ +HPNDHVN  QSSND  PT + I+A      RL+P LK L   ++ ++
Sbjct:   35 RAIENFPISGRS--MPQGFIHALGFIKAAAAKVNAELGLLPKPMAKEIEAAALDVAAGRYDADFPVDIYQTGSGTSSNMNANEVIAT-----LAMRATKEPIHPNDHVNLGQSSNDVVPTAIRISATLAVQGRLLPALKHLRKMINKRA 176          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_BACSU (Aspartate ammonia-lyase OS=Bacillus subtilis GN=ansB PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.349e-26
Identity = 68/150 (45.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+ +NF I G +  + E ++ A  I+KK AA  NM+   L   IG+AI+QAA E+ EGK +D F +   Q G+GT  NMNANEVI NRA EI+GHK+G+ I + PN HVN SQS+ND FPT +HI+       +L+  ++ +H+    K+
Sbjct:   32 RASENFPITGYK--IHEEMINALAIVKKAAALANMDVKRLYEGIGQAIVQAADEILEGKWHDQFIVDPIQGGAGTSMNMNANEVIGNRALEIMGHKKGDYIHLSPNTHVNMSQSTNDVFPTAIHISTLK-LLEKLLKTMEDMHSVFKQKA 178          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.374e-26
Identity = 66/149 (44.30%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R++ NF + G+R  MP+  VRA  + K  AA+ N+    LD  +G+AI     ++ +     HFP+ V+QTGSGT SNMNANEV+A  A+  LG K     V+PNDHVN  QSSND  P+ +HI+AA   + RL+P L+ L  ++ SK+
Sbjct:   28 RAVNNFPVSGQR--MPQAFVRALLLAKAAAARANVSLQQLDAPMGEAIADTCLQLLQEDFMQHFPVDVFQTGSGTSSNMNANEVVATLASRRLGGK-----VNPNDHVNCGQSSNDIIPSTIHISAALEISERLLPALRHLEQTIQSKA 169          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_PROMA (Fumarate hydratase class II OS=Prochlorococcus marinus GN=fumC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.273e-25
Identity = 67/149 (44.97%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RSL NF IG    +MP  ++ +   +K  AA VN   G LD      I+ A  E++ G  ++ FPL VWQTGSGTQ+NMN NEVI+N A+ + G+K G  + +HPNDHVNRSQS+ND FP  + IA        L+P L  L  +   K
Sbjct:   29 RSLINFAIG--HNKMPMKLIYSIVQIKASAAIVNCRLGVLDKQRKNFILNACNEISNGMHDEQFPLSVWQTGSGTQTNMNVNEVISNIASHLNGNKLGSHEPLHPNDHVNRSQSTNDVFPAAIQIATVQEILENLLPELDQLIETFDKK 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_PROMP (Fumarate hydratase class II OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fumC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.702e-25
Identity = 65/150 (43.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGK-AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RS+ NF IG   E +P  ++ +  ++K+ AA  N + GL   + K  I++A  E+ +GK +  FPL +WQTGSGTQ+NMN NEVI+N AA       G    +HPND VN+SQS+NDTFP  + I+       +L+P++K L   L SKS
Sbjct:   29 RSIINFSIG--EELIPIELIYSLTVIKRAAAISNFKLGLINNVKKDLIIEACTEILDGKHDSQFPLKIWQTGSGTQTNMNINEVISNIAALKTNSGLGSHHPIHPNDDVNKSQSTNDTFPAAIQISVVTQIIKKLVPSIKELTKVLDSKS 176          
The following BLAST results are available for this feature:
BLAST of FC932230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_MYCTU3.236e-2948.99Fumarate hydratase class II OS=Mycobacterium tuber... [more]
FUMC_MYCBO3.236e-2948.99Fumarate hydratase class II OS=Mycobacterium bovis... [more]
FUMC_CORGL3.236e-2949.66Fumarate hydratase class II OS=Corynebacterium glu... [more]
FUMC_COREF9.415e-2949.66Fumarate hydratase class II OS=Corynebacterium eff... [more]
FUMC_XYLFT1.151e-2644.97Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_XYLFA1.151e-2644.97Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
ASPA_BACSU3.349e-2645.33Aspartate ammonia-lyase OS=Bacillus subtilis GN=an... [more]
FUMC1_PSEAE4.374e-2644.30Fumarate hydratase class II 1 OS=Pseudomonas aerug... [more]
FUMC_PROMA1.273e-2544.97Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC_PROMP3.702e-2543.33Fumarate hydratase class II OS=Prochlorococcus mar... [more]

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Properties
Property NameValue
Genbank descriptionC34206A06EF PostHarveN Citrus clementina cDNA clone C34206A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932230 ID=FC932230; Name=FC932230; organism=Citrus clementina; type=EST; length=446bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAAATGGAAACAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGT
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