FC932241

Overview
NameFC932241
Unique NameFC932241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA_USTMA (Nitrate reductase [NADPH] OS=Ustilago maydis GN=NAR1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 56/205 (27.32%), Postives = 95/205 (46.34%), Query Frame = 3 
Query:  177 KVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCR-----GKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY-------------PQGRMSHHFREMRVGD-----YLAVKGPKGRF--------RYQPG----QVRAFGMTAGGSGITPMFQVTRAILEKTQ*QT----------KVHLIYANVTYXDIL 656
            K  LDP+ ++  +LV +  +S +   F F L +    LGLP+GQH+  R      +  + E V + YTP + ++  G  +++IK+Y               G+M+    ++ V        + +KGP G F        R++P     +VR   M AGGSGITP++   +AI ++    +          ++ ++Y N T  DIL
Sbjct:  682 KPFLDPKKWRATRLVSKQIISPDARIFRFALGSEDQELGLPVGQHVFVRVRSKNARTGETEMVQRAYTPYSGNTQRGFLDILIKVYFPSDAAATSAPAFEGGKMTMLLEKIDVSSPSDDLTIELKGPLGSFTYLGQQQIRWKPASAVRRVRKLAMIAGGSGITPIWSTLKAIADEVLDASNPSSPALDPIQIWIVYGNRTEQDIL 886
The following BLAST results are available for this feature:
BLAST of FC932241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NIA_USTMA3.363e-1127.32Nitrate reductase [NADPH] OS=Ustilago maydis GN=NA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206C01EF PostHarveN Citrus clementina cDNA clone C34206C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932241 ID=FC932241; Name=FC932241; organism=Citrus clementina; type=EST; length=658bp
TATATACATATATTGACAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAG
CTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCA
GCTTCTCGTTGGTGGAGCTGTGGCTGTTCTGGCCATTGCTGTTGGTGCTG
CTTACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAAT
TTCAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGC
AAAGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAA
TTGGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTT
ATTAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGA
ATTGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTG
AGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTC
AGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTC
TGGCATCACTCCAATGTTCCAAGTTACTAGAGCCATATTAGAGAAAACCC
AATGACAGACAAAGGTGCACCTCATTTATGCCAATGTTACATATGANGAC
ATTCTTTT
back to top