FC932241

Overview
NameFC932241
Unique NameFC932241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NCB5R_ARATH (NADH-cytochrome b5 reductase-like protein OS=Arabidopsis thaliana GN=At5g20080 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 75/176 (42.61%), Postives = 110/176 (62.50%), Query Frame = 3
Query:  153 YLYSSKK---PKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCR---GKDSQGEE--VIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            YL  +K+   PK +L+P+ + EFKL    ++SHN   F F    P++ LGL +   +  R   G +++G+   VI+PYTP +     G+F+L+IK+YP G+MS HF  ++ GD L VKGP  +F+Y P   +  GM AGGSGITPM QV  AI++  +  T++ L+YANV+  DIL
Sbjct:   59 YLDQAKEETGPKTALNPDKWLEFKLQDTARVSHNTQLFRFSFD-PSAELGLHVASCLLTRAPLGYNAEGKTKYVIRPYTPISDPEAKGYFDLLIKVYPDGKMSQHFASLKPGDVLEVKGPVEKFKYSPNMKKHIGMIAGGSGITPMLQVIDAIVKNPEDNTQISLLYANVSPDDIL 233          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R3_MACFA (NADH-cytochrome b5 reductase 3 OS=Macaca fascicularis GN=CYB5R3 PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.028e-28
Identity = 73/193 (37.82%), Postives = 108/193 (55.96%), Query Frame = 3
Query:  156 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            L+    P ++L+  + K   +L+ R  +SH+  +F F LP+P  +LGLP+GQHI    +   G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI++     T  HL++AN T  DIL
Sbjct:   26 LFRCSTPAITLESPDIKYSLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSNPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIL 217          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R1_RAT (NADH-cytochrome b5 reductase 1 OS=Rattus norvegicus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.028e-28
Identity = 71/190 (37.37%), Postives = 109/190 (57.37%), Query Frame = 3
Query:  165 SKKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            S++P+V+L DP+     +L+ +  +SHN  +F F LPT   +LGLP+G+H+    +   G +VI+PYTP T D D G+ +LVIK+Y +G         +MS +   +++GD +  +GP        KG F  QP +         +  GM AGG+GITPM Q+ RAIL+  +  T+  L++AN T  DI+
Sbjct:   33 SRRPQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFALPTAHHILGLPVGKHVYLSAR-IDGSQVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFSEGGKMSQYLDSLKIGDVVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDII 221          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R1_BOVIN (NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CYB5R1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.954e-28
Identity = 72/190 (37.89%), Postives = 108/190 (56.84%), Query Frame = 3
Query:  165 SKKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            S++P V+L DP    + +L+ +  ++HN  +F F LPT   VLGLP+G+H+    +   G  VI+PYTP T D D G+ +LVIK+Y +         G+MS +   +++GD +  +GP        KG+F  QP +         R  GM AGG+GITPM Q+ RAIL+  +  T+  L++AN T  DI+
Sbjct:   33 SRRPPVTLLDPNEKYQLRLLDKTTVNHNTKRFRFALPTAHHVLGLPVGKHVYLSAR-IDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPSGLLTYAGKGKFNIQPNKKAPPEARVARNLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDII 221          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1_YARLI (NADH-cytochrome b5 reductase 2 OS=Yarrowia lipolytica GN=MCR1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.954e-28
Identity = 61/154 (39.61%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  195 ENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            + + + KL     LSHN     FELPTP S LGL     +  +    +G  V++PYTP +     G FELV+K YP+G+MS H  E++ GD L+ KGP  ++++QP   +   +   G+GITP++Q+  AI +  + +TKV+L Y N T  DIL
Sbjct:   41 DQWVDLKLKSSKDLSHNTKALIFELPTPDSTLGLTTASALLTKYVTPKGSNVVRPYTPVSDPDSKGEFELVVKSYPEGKMSKHIHELKEGDTLSFKGPIIKYQWQPNLHKEITLIGAGTGITPLYQLISAINKNPEDKTKVNLFYGNATEGDIL 194          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R3_HUMAN (NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=CYB5R3 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28
Identity = 72/193 (37.31%), Postives = 108/193 (55.96%), Query Frame = 3
Query:  156 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            L+    P ++L+  + K   +L+ R  +SH+  +F F LP+P  +LGLP+GQHI    +   G  V++PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI++     T  HL++AN T  DIL
Sbjct:   26 LFQRSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIL 217          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R3_BOVIN (NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CYB5R3 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28
Identity = 72/193 (37.31%), Postives = 108/193 (55.96%), Query Frame = 3
Query:  156 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            L+    P ++L+  + K   +L+ +  +SH+  +F F LP+P  +LGLP+GQHI    +   G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI++     T  HL++AN T  DIL
Sbjct:   25 LFQRSTPAITLENPDIKYPLRLIDKEVISHDTRRFRFALPSPEHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSDPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIL 216          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R3_CANFA (NADH-cytochrome b5 reductase 3 OS=Canis familiaris GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.151e-27
Identity = 71/193 (36.79%), Postives = 108/193 (55.96%), Query Frame = 3
Query:  156 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            L+    P ++L+  + K   +L+ +  ++H+  +F F LP+P  +LGLP+GQHI    +   G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI++     T  HL++AN T  DIL
Sbjct:   26 LFQRSTPAITLESPDIKYPLRLIDKEVINHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSNPIIKTVKSVGMIAGGTGITPMLQVIRAIIKDPHDPTVCHLLFANQTEKDIL 217          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R1_MOUSE (NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.151e-27
Identity = 71/190 (37.37%), Postives = 108/190 (56.84%), Query Frame = 3
Query:  165 SKKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            S++P+V+L DP+     +L+ +  +SHN  +F F LPT   +LGLP+G+H+    +   G  VI+PYTP T D D G+ +LVIK+Y +G         +MS +   +++GD +  +GP        KG F  QP +         +  GM AGG+GITPM Q+ RAIL+  +  T+  L++AN T  DI+
Sbjct:   33 SRRPQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFALPTAHHILGLPVGKHVYLSAR-IDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDMVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTERDII 221          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1_USTMA (NADH-cytochrome b5 reductase 2 OS=Ustilago maydis GN=MCR1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.963e-27
Identity = 65/163 (39.88%), Postives = 94/163 (57.67%), Query Frame = 3
Query:  183 SLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRG-----KDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            +L+ + F EF L +    +H+ A   FELP      G+ +   +  +      KD QG++VI+PYTP T    VGH + ++K YP G+M+ +   M+ GD L +KGP  +F Y+  +  + GM AGGSGITPM+QV + I      +TKV LIY+N T  DIL
Sbjct:   92 ALNKDQFVEFTLKEIKPYNHDSATLIFELPEGKKP-GMGVASAVVVKAVGDGLKDDQGKDVIRPYTPITSPDTVGHMDFLVKKYPGGKMTTYMHSMKPGDKLGIKGPIAKFAYKANEFESIGMIAGGSGITPMYQVIQDIASNPSDKTKVTLIYSNKTEQDIL 253          
The following BLAST results are available for this feature:
BLAST of FC932241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NCB5R_ARATH1.715e-3142.61NADH-cytochrome b5 reductase-like protein OS=Arabi... [more]
NB5R3_MACFA3.028e-2837.82NADH-cytochrome b5 reductase 3 OS=Macaca fascicula... [more]
NB5R1_RAT3.028e-2837.37NADH-cytochrome b5 reductase 1 OS=Rattus norvegicu... [more]
NB5R1_BOVIN3.954e-2837.89NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CY... [more]
MCR1_YARLI3.954e-2839.61NADH-cytochrome b5 reductase 2 OS=Yarrowia lipolyt... [more]
NB5R3_HUMAN5.165e-2837.31NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=... [more]
NB5R3_BOVIN5.165e-2837.31NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CY... [more]
NB5R3_CANFA1.151e-2736.79NADH-cytochrome b5 reductase 3 OS=Canis familiaris... [more]
NB5R1_MOUSE1.151e-2737.37NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=... [more]
MCR1_USTMA1.963e-2739.88NADH-cytochrome b5 reductase 2 OS=Ustilago maydis ... [more]

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Properties
Property NameValue
Genbank descriptionC34206C01EF PostHarveN Citrus clementina cDNA clone C34206C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932241 ID=FC932241; Name=FC932241; organism=Citrus clementina; type=EST; length=658bp
TATATACATATATTGACAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAG
CTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCA
GCTTCTCGTTGGTGGAGCTGTGGCTGTTCTGGCCATTGCTGTTGGTGCTG
CTTACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAAT
TTCAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGC
AAAGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAA
TTGGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTT
ATTAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGA
ATTGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTG
AGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTC
AGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTC
TGGCATCACTCCAATGTTCCAAGTTACTAGAGCCATATTAGAGAAAACCC
AATGACAGACAAAGGTGCACCTCATTTATGCCAATGTTACATATGANGAC
ATTCTTTT
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