FC932241

Overview
NameFC932241
Unique NameFC932241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R1_HUMAN (NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=CYB5R1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.372e-27
Identity = 73/190 (38.42%), Postives = 106/190 (55.79%), Query Frame = 3
Query:  165 SKKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            S++P+V+L DP      +L+ +  +SHN  +F F LPT    LGLP+G+HI    +   G  VI+PYTP T D D G+ +LVIK+Y +G         +MS +   ++VGD +  +GP        KG F  QP +         +  GM AGG+GITPM Q+ RAIL+  +  T+  L++AN T  DI+
Sbjct:   33 SRRPQVTLLDPNEKYLLRLLDKTTVSHNTKRFRFALPTAHHTLGLPVGKHIYLSTR-IDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDII 221          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R3_PIG (NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus scrofa GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.710e-27
Identity = 70/187 (37.43%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  174 PKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            P ++L+  + K   +L+ +  ++H+  +F F LP+P  +LGLP+GQHI    +   G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI++     T  HL++AN T  DIL
Sbjct:    3 PAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPEHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIL 188          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R3_RAT (NADH-cytochrome b5 reductase 3 OS=Rattus norvegicus GN=Cyb5r3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.245e-26
Identity = 69/193 (35.75%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  156 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQPG----------------QVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            L+    P ++L+  + K   +L+ +  +SH+  +F F LP+P  +LGLPIGQHI    +   G  VI+PYTP + D D G  +LV+K+Y +         G+MS +   M +GD +  +GP G   YQ                   V++ GM AGG+GITPM QV RA+L+     T  +L++AN +  DIL
Sbjct:   26 LFQRSSPAITLENPDIKYPLRLIDKEIISHDTRRFRFALPSPQHILGLPIGQHIYLSTR-IDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDIL 217          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R2_XENLA (NADH-cytochrome b5 reductase 2 OS=Xenopus laevis GN=cyb5r2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.245e-26
Identity = 69/190 (36.32%), Postives = 101/190 (53.16%), Query Frame = 3
Query:  162 SSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            + K P   LDP       L+++ ++SH+  KF F LP+   VLGLP+GQHI    K   G  V++ YTP + D   GH +LV+K+Y +         G+MS H   +++G+ +  +GP        KG+F  +P +         +  GM AGG+GITPM Q+ R I +     TK +LI+AN T  DIL
Sbjct:   24 AKKAPVTLLDPNAKYPLPLIEKQEISHDTKKFRFGLPSAEHVLGLPVGQHIYLSAK-VNGSLVVRAYTPVSSDEVKGHVDLVVKVYYKNVNPKFPDGGKMSQHLDSLKIGETIDFRGPNGLLVYKGKGKFAIRPDKKAEPKIKVAKHVGMLAGGTGITPMLQLIRQITQDPNDNTKCYLIFANQTEDDIL 212          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R2_MOUSE (NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=Cyb5r2 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.077e-25
Identity = 71/189 (37.57%), Postives = 106/189 (56.08%), Query Frame = 3
Query:  168 KKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY--------PQG-RMSHHFREMRVGDYLAVKGPKGRFRY-QPGQ---------------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            KK  ++L DPE      L+++ Q+SHN  +F F LP+P  VLGLP+G ++    + +  E VI+ YTP + D D G  +L+IK+Y        P+G +M+ +   M++GD +  +GP GR  Y +PG                V   GM AGG+GITPM Q+ R I + T  +T++ L++AN T  DIL
Sbjct:    5 KKDLITLQDPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQINN-ELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNEPGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKDTSDETRMSLLFANQTEEDIL 192          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1A_VANPO (NADH-cytochrome b5 reductase 2-A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MCR1A PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 58/174 (33.33%), Postives = 99/174 (56.90%), Query Frame = 3
Query:  153 YLYSS------KKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            Y YSS      +  KV +   N+ +  + +  ++SH+  +FTF+ P+  SV GL +   +  +    +G  VI+PYTP +   + G  +LVIK YP G+M++H   ++V D L+ KGP  ++++ P    +  +  GG+GITP++Q+  AI +    +TK+ L Y+N T  D+L
Sbjct:   27 YYYSSGAFLRNESSKVFIGDNNWIDLPISRIEEISHDTKRFTFKYPSQDSVSGLVVASALLTKFVTPKGSNVIRPYTPVSDVDEKGSLDLVIKHYPDGKMTNHIFSLKVNDTLSFKGPIPKWKWVPNSFESITLIGGGTGITPLYQLIHAITKNPNDKTKIRLFYSNKTSQDVL 200          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R2_XENTR (NADH-cytochrome b5 reductase 2 OS=Xenopus tropicalis GN=cyb5r2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 67/190 (35.26%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  162 SSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            + K P   LDP       L+++ ++SH+  KF F LP+   VLGLP+GQH+    K   G  V++ YTP + D   GH +L++K+Y +         G+MS H   +++G+ +  +GP        KG+F  +P +         +  GM AGG+GITPM Q+ R I +     TK  LI+AN T  DIL
Sbjct:   32 AKKAPLTLLDPNAKYPLPLIEKQEISHDTKKFRFGLPSQEHVLGLPVGQHVYLSAK-INGSLVVRAYTPVSSDEVKGHVDLIVKVYYKNVHPKFPEGGKMSQHLDSLKIGETIDFRGPNGLLVYKEKGKFAIRPDKKSEPKLKVAKHVGMLAGGTGITPMLQLIRQITQDPNDNTKCSLIFANQTEDDIL 220          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1_ASPCL (NADH-cytochrome b5 reductase 2 OS=Aspergillus clavatus GN=mcr1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 60/163 (36.81%), Postives = 94/163 (57.67%), Query Frame = 3
Query:  171 KPKVSLDPEN-FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            +PKV    E  + + KL +   LSHN  +  FE     +V GL +   +  + K ++G+ VI+PYTP + +   G+ +LV+K+YP G MS H   M V   L  KGP  ++ ++  + +   + AGG+GITPM+Q+ R I +  + QTKV L++ NV+  DIL
Sbjct:   63 RPKVFTGGEQGWVDLKLSEIENLSHNTKRLRFEFADKEAVSGLQVASALLTKFKPAEGKPVIRPYTPVSDEDQPGYLDLVVKVYPNGPMSEHLHSMNVDQRLEFKGPIPKYPWETNKHKHICLIAGGTGITPMYQLARQIFKNPEDQTKVTLVFGNVSEEDIL 225          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1_COCIM (NADH-cytochrome b5 reductase 2 OS=Coccidioides immitis GN=MCR1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.092e-25
Identity = 61/155 (39.35%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 ENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEE-VIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            + + + KL     LSHNV +F FE P   SV GL I   +  + K  + E+  I+PYTP + +   G+ +LV+K YP G MS H   M VG  L+ KGP  ++ ++  +     M AGG+GITPM+Q+ R I      +TKV L++ N+T  DIL
Sbjct:   74 QGWVDLKLAGIETLSHNVKRFRFEFPDSESVSGLHIASALLTKYKGPKDEKPTIRPYTPVSEEEQPGYLDLVVKQYPNGPMSTHLHNMAVGQQLSFKGPIPKYPWEQNKHDHICMIAGGTGITPMYQIIRKIFNNPNDKTKVTLVFGNITEEDIL 228          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 71/179 (39.66%), Postives = 102/179 (56.98%), Query Frame = 3
Query:  180 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQ-PGQVRAFG---------MTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            V+L P      KLV +  +SH+V KF F LP+   VLGLP+G+HI  C   D   +  ++ YTPT+   +VG FELV+K+Y +         G+MS H   + +G +L VKGP G   YQ  G     G         M AGG+GITP++QV ++IL+  +  T+++++YAN T  DIL
Sbjct:  649 VALIPREKIPCKLVDKQSISHDVRKFKFALPSEDQVLGLPVGKHIFLCATVDD--KLCMRAYTPTSTVDEVGFFELVVKIYFKGVHPKFPNGGQMSQHLDSLPIGAFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQSILKDPEDDTEMYVVYANRTEDDIL 825          
The following BLAST results are available for this feature:
BLAST of FC932241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NB5R1_HUMAN4.372e-2738.42NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=... [more]
NB5R3_PIG5.710e-2737.43NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus s... [more]
NB5R3_RAT8.245e-2635.75NADH-cytochrome b5 reductase 3 OS=Rattus norvegicu... [more]
NB5R2_XENLA8.245e-2636.32NADH-cytochrome b5 reductase 2 OS=Xenopus laevis G... [more]
NB5R2_MOUSE1.077e-2537.57NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=... [more]
MCR1A_VANPO2.399e-2533.33NADH-cytochrome b5 reductase 2-A OS=Vanderwaltozym... [more]
NB5R2_XENTR3.133e-2535.26NADH-cytochrome b5 reductase 2 OS=Xenopus tropical... [more]
MCR1_ASPCL3.133e-2536.81NADH-cytochrome b5 reductase 2 OS=Aspergillus clav... [more]
MCR1_COCIM4.092e-2539.35NADH-cytochrome b5 reductase 2 OS=Coccidioides imm... [more]
NIA_SOLLC6.980e-2539.66Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]

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Properties
Property NameValue
Genbank descriptionC34206C01EF PostHarveN Citrus clementina cDNA clone C34206C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932241 ID=FC932241; Name=FC932241; organism=Citrus clementina; type=EST; length=658bp
TATATACATATATTGACAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAG
CTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCA
GCTTCTCGTTGGTGGAGCTGTGGCTGTTCTGGCCATTGCTGTTGGTGCTG
CTTACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAAT
TTCAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGC
AAAGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAA
TTGGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTT
ATTAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGA
ATTGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTG
AGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTC
AGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTC
TGGCATCACTCCAATGTTCCAAGTTACTAGAGCCATATTAGAGAAAACCC
AATGACAGACAAAGGTGCACCTCATTTATGCCAATGTTACATATGANGAC
ATTCTTTT
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