FC932241

Overview
NameFC932241
Unique NameFC932241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 71/179 (39.66%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  180 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRYQ-PGQVRAFG---------MTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            V+L P      KL+ +  +SH+V KF F LP+   VLGLP+G+HI  C   D +    ++ YTPT+   +VG+FELV+K+Y +G         +MS +   M +G +L VKGP G   YQ  G     G         M AGG+GITP++QV +AIL+  +  T+++++YAN T  DIL
Sbjct:  642 VALIPREKIPCKLIDKQSISHDVRKFRFALPSEDQVLGLPVGKHIFLCAVIDDK--LCMRAYTPTSTIDEVGYFELVVKIYFKGIHPKFPNGGQMSQYLDSMPLGSFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQAILKDPEDDTEMYVVYANRTEDDIL 818          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R3_MOUSE (NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=Cyb5r3 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 68/193 (35.23%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  156 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQPG----------------QVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            L+    P ++L+  + K   +L+ +  +S +  +F F LP+P  +LGLPIGQHI    +   G  VI+PYTP + D D G  +LV+K+Y +         G+MS +   M++GD +  +GP G   YQ                   V++ GM AGG+GITPM QV RA+L+     T  +L++AN +  DIL
Sbjct:   26 LFQRSTPAITLENPDIKYPLRLIDKEVISPDTRRFRFALPSPQHILGLPIGQHIYLSTR-IDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPKFPAGGKMSQYLENMKIGDTIEFRGPNGLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDIL 217          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R2_RAT (NADH-cytochrome b5 reductase 2 OS=Rattus norvegicus GN=Cyb5r2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = 3
Query:  168 KKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY--------PQG-RMSHHFREMRVGDYLAVKGPKGRFRY-QPGQ---------------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            KK  ++L DPE      L+++ Q++HN  +F F LP+P  VLGLP+G ++    + +  E VI+ YTP + D D G  +L+IK+Y        P+G +M+ +   M++GD +  +GP GR  Y +PG                V   GM AGG+GITPM Q+ R I + T   T++ L++AN T  DIL
Sbjct:    5 KKDLITLQDPEAKYPLPLIEKEQINHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQINN-ELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNEPGTLLIKTDKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKDTSDGTRMSLLFANQTEEDIL 192          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.116e-25
Identity = 69/179 (38.55%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  180 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRYQPGQ----------VRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            V+L P      KLV +  +SH+V KF F LP+   VLGLP+G+HI  C   D +    ++ YTPT+   +VG+FELV+K+Y +G         +MS +   + +G ++ VKGP G   YQ              +   M AGG+GITP++QV +AIL+  + +T++H++YAN T  DIL
Sbjct:  647 VALIPREKIPCKLVDKKSISHDVRKFRFALPSEDQVLGLPVGKHIFLCAIIDDK--LCMRAYTPTSTVDEVGYFELVVKIYFKGIVPKFPNGGQMSQYLDSLPLGAFVDVKGPLGHIEYQGRGNFLVHGKRKFAKKLAMLAGGTGITPVYQVMQAILKDPEDETEMHVVYANRTEDDIL 823          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.191e-24
Identity = 70/180 (38.89%), Postives = 100/180 (55.56%), Query Frame = 3
Query:  177 KVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            KV+L P      KL+ R  +SH+V  F F LP+    LGLP+G+HI  C   D  G+  ++ YTPT+   +VG+FELV+K+Y +G          MS H   + +G  L VKGP G   Y          +    +   M AGG+GITP++QV +AIL+  +  TK++++YAN T  DIL
Sbjct:  638 KVALIPREKIPCKLISRTSISHDVRVFRFALPSEDQQLGLPVGKHIFLCATVD--GKLCMRAYTPTSGVDEVGYFELVVKVYFKGVHPKFPNGGAMSQHLDSLPIGSDLDVKGPLGHIEYTGRGNFLVHGKHRFAKKLAMLAGGTGITPIYQVAQAILKDPEDHTKMYVVYANRTEDDIL 815          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.191e-24
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  174 PKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY---------PQGRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-EKTQ*QTKVHLIYANVTYXDIL 656
            P     P +    +LV + +LS +V  F F LP+   VLGLP+G+HI       +G+  ++ YTPT++  +VGHF+L+IK+Y           G M+ +   + VG Y+ VKGP G   Y          +P   R   M AGGSGITPM+QV +++L ++ +  T++HL+YAN T  DIL
Sbjct:  649 PVALSSPRDKVPCQLVDKKELSRDVRLFRFALPSSDQVLGLPVGKHIFVCA-SIEGKLCMRAYTPTSMVDEVGHFDLLIKVYFKNEHPKFPDGGLMTQYLDSLPVGAYIDVKGPLGHVEYTGRGEFVINGKPRNARRLAMIAGGSGITPMYQVIQSVLRDQPEDTTEMHLVYANRTEDDIL 828          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R2_HUMAN (NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=CYB5R2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24
Identity = 67/188 (35.64%), Postives = 103/188 (54.79%), Query Frame = 3
Query:  168 KKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY-----PQ----GRMSHHFREMRVGDYLAVKGPKGR-FRYQPGQVRA---------------FGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            ++P    DPE      L+++ ++SHN  +F F LP+P  VLGLP+G ++    K    E V++ YTP + D D G  +L+IK+Y     PQ    G+M+ +   M++G+ +  +GP+GR F + PG +                  GM AGG+GITPM Q+ R I +    +T++ LI+AN T  DIL
Sbjct:    6 REPITLQDPEAKYPLPLIEKEKISHNTRRFRFGLPSPDHVLGLPVGNYVQLLAK-IDNELVVRAYTPVSSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQYLENMKIGETIFFRGPRGRLFYHGPGNLGIRPDQTSEPKKTLADHLGMIAGGTGITPMLQLIRHITKDPSDRTRMSLIFANQTEEDIL 192          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1_LODEL (NADH-cytochrome b5 reductase 2 OS=Lodderomyces elongisporus GN=MCR1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24
Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  207 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            + KL K   L+HN    TFEL  P  V GL     +  +    +G  VI+PYTP +     G  + VIK Y  G+MS+H   ++ G+ L+ KGP  +++++P Q ++  +  GG+GITP++Q+ R I    + +TKV LIY N +  D+L
Sbjct:   53 DLKLKKSEDLTHNTKHLTFELLNPDDVSGLITASMLMTKYVTPKGNNVIRPYTPVSDPDQKGTLDFVIKRYENGKMSNHIHNLKEGETLSFKGPVVKWKWEPNQFKSIALIGGGTGITPLYQLLREITSNPEDKTKVSLIYGNTSPEDVL 202          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 66/179 (36.87%), Postives = 104/179 (58.10%), Query Frame = 3
Query:  180 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            V+L+P      KL++++ LSH+V +F F LP+   VLGLP+G+HI  C   D +    ++ YTP++    VG+F+LV+K+Y +         G MS H   + +G  + VKGP G   Y          +P   +   M +GG+GITP++QV +AIL+  + +T++H++YAN T  DIL
Sbjct:  665 VALNPRVKIPCKLIEKVSLSHDVRRFRFGLPSEDQVLGLPVGKHIFLCANVDDK--LCMRAYTPSSTIDVVGYFDLVVKVYFKDVHPRFPNGGVMSQHLDSLSLGSIVDVKGPLGHIEYLGKGNFTVHGKPKFAKKLAMISGGTGITPIYQVMQAILKDPEDKTEMHVVYANRTEEDIL 841          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NB5R2_DANRE (NADH-cytochrome b5 reductase 2 OS=Danio rerio GN=cyb5r2 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 70/189 (37.04%), Postives = 104/189 (55.03%), Query Frame = 3
Query:  165 SKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQP-----GQVRAF---GMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            +K PK   DP       L+++ +++H+  +F F LP+ + VLGLPIGQHI    K   G  V++ YTP + D D G+ +LV+K+Y +         G+MS +   M++GD +  +GP        KG+F  +P      +VR F    M AGG+GITPM Q+ R+I   +  +T   LI+AN T  DIL
Sbjct:   38 NKIPKALQDPSVKYPLPLIEKEEINHDTKRFRFGLPSSSHVLGLPIGQHIYLSAK-VNGSLVVRAYTPVSSDQDQGYVDLVVKVYYKNTHPSYPDGGKMSQYLDNMKIGDTIDFRGPNGLLVYNGKGKFAIRPDKKSEAEVRKFKHVAMIAGGTGITPMLQLIRSITADSFDETVCSLIFANQTEKDIL 225          
The following BLAST results are available for this feature:
BLAST of FC932241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NIA2_TOBAC6.980e-2539.66Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NB5R3_MOUSE6.980e-2535.23NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=... [more]
NB5R2_RAT6.980e-2537.04NADH-cytochrome b5 reductase 2 OS=Rattus norvegicu... [more]
NIA_PETHY9.116e-2538.55Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NIA_LOTJA1.191e-2438.89Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA1_ORYSJ1.191e-2437.57Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NB5R2_HUMAN1.555e-2435.64NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=... [more]
MCR1_LODEL1.555e-2436.67NADH-cytochrome b5 reductase 2 OS=Lodderomyces elo... [more]
NIA_SPIOL2.031e-2436.87Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NB5R2_DANRE2.031e-2437.04NADH-cytochrome b5 reductase 2 OS=Danio rerio GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC34206C01EF PostHarveN Citrus clementina cDNA clone C34206C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932241 ID=FC932241; Name=FC932241; organism=Citrus clementina; type=EST; length=658bp
TATATACATATATTGACAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAG
CTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCA
GCTTCTCGTTGGTGGAGCTGTGGCTGTTCTGGCCATTGCTGTTGGTGCTG
CTTACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAAT
TTCAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGC
AAAGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAA
TTGGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTT
ATTAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGA
ATTGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTG
AGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTC
AGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTC
TGGCATCACTCCAATGTTCCAAGTTACTAGAGCCATATTAGAGAAAACCC
AATGACAGACAAAGGTGCACCTCATTTATGCCAATGTTACATATGANGAC
ATTCTTTT
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