FC932241

Overview
NameFC932241
Unique NameFC932241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.242e-22
Identity = 63/168 (37.50%), Postives = 94/168 (55.95%), Query Frame = 3
Query:  213 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            KLV +  LSH+V  F   LP+   VLGLP+G+H+  C   D +    ++ YTPT+   +VG+ +LV+K+Y +         G MS H   + +G  L VKGP G   Y          +P   +   M AGG+GITP++QV +AIL+  + +T++ ++YAN T  DIL
Sbjct:  648 KLVYKKSLSHDVRLFRLALPSDDQVLGLPVGKHVFLCATIDDK--LCMRAYTPTSTIDEVGYLDLVVKIYFKNSNPRFPNGGLMSQHLDSLPIGSVLHVKGPLGHVEYTGRGNFLVHGEPKFAKRLAMVAGGTGITPIYQVIQAILKDPEDETEMFVVYANRTEDDIL 813          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22
Identity = 62/167 (37.13%), Postives = 96/167 (57.49%), Query Frame = 3
Query:  213 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY-----PQ----GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            +LV++  +SH+V KF F LP    VLGLP+G+HI      +  +  ++ YTP++    VG+FELV+K+Y     P+    G MS +   + +G  L +KGP G   Y          +P       M AGG+GITP++Q+ +AIL+  + +T++++IYAN T  DIL
Sbjct:  666 QLVEKTSISHDVRKFRFALPVEDMVLGLPVGKHIFLCATIND-KLCLRAYTPSSTVDVVGYFELVVKIYFGGVHPRFPNGGLMSQYLDSLPIGSTLEIKGPLGHVEYLGKGSFTVHGKPKFADKLAMLAGGTGITPVYQIIQAILKDPEDETEMYVIYANRTEEDIL 831          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 65/179 (36.31%), Postives = 98/179 (54.75%), Query Frame = 3
Query:  180 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGR---------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            V+L P      KL+ +  +SH+V  F F LP+   ++GL +G+HI  C   D +    ++ YTPT+   +VG+F+LV+K+Y +G          MS H   + +G  L VKGP G   Y          +P       M AGG+GITP++QV +AIL+  +  T++H++YAN T  DIL
Sbjct:  625 VALIPREKIPCKLISKTSISHDVRLFRFGLPSDGLLMGLAVGKHIFLCVTVDEK--LCMRAYTPTSSVHEVGYFDLVVKVYFKGVHPKFPNGGIMSQHLDSLPIGSVLDVKGPLGHIEYTGRGNFLVHGKPRFATRLAMLAGGTGITPIYQVVQAILKDPEDCTEMHVVYANRTEDDIL 801          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1_ASHGO (NADH-cytochrome b5 reductase 2 OS=Ashbya gossypii GN=MCR1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  213 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            K+ K  Q+SH+  +FTF LP+   V GL     +  +    +G  VI+PYTP + +   G F+LVIK Y  G+ + H   ++  D +  KGP  ++R+ P    +  +   G+GITP+FQ+   I E     TKVHL+Y N T  DIL
Sbjct:   63 KIAKIEQVSHDTRRFTFALPSQDHVTGLTTASALLAKYVTPKGSNVIRPYTPVSDNMARGMFQLVIKHYDGGKFTTHLFGLKENDTVEFKGPIQKWRWDPNMFDSIVLMGAGTGITPLFQMMHHIAENPTDNTKVHLLYGNKTPQDIL 210          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.232e-21
Identity = 59/176 (33.52%), Postives = 94/176 (53.41%), Query Frame = 3
Query:  186 LDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            ++P       L+++  +SH+V +F F LP+    LGLP+G+HI      +  +  ++ YTPT+    VGH +LV+K+Y +         G MS H   + +G  L +KGP G   Y          +P   +   M AGG GITP++QV ++IL   + +T++ ++YAN T  DIL
Sbjct:  651 VNPREKVPVTLIEKTSISHDVRRFRFALPSEDQQLGLPVGKHIFLCANIND-KLCLRAYTPTSTVDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSVLNIKGPLGHIEYLGKGNFMVTGKPKFAKKLAMLAGGPGITPIYQVIQSILSDPEDETEMFVVYANRTEDDIL 825          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1_CHAGB (NADH-cytochrome b5 reductase 2 OS=Chaetomium globosum GN=MCR1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.232e-21
Identity = 60/166 (36.14%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  162 SSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEE-VIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            S  K  ++   + +   KL +   ++HN  +  F LP    V G+ +   I  + K    E+ VI+PYTPT  +   G+ +L++K YP G MS H  +M  G  L VKGP  ++ +   +     + AGG+GITPMFQ+ RAI      QTKV L++ NV   DIL
Sbjct:   86 SEVKQALTGGEQGWVSLKLEEVEIVNHNSKRLRFRLPEDDMVSGVHVASAILTKFKPVDAEKPVIRPYTPTNDEDARGYLDLLVKKYPNGPMSTHLHDMVPGQRLDVKGPLPKYPWTANKHGHIALVAGGTGITPMFQLCRAIFNNPDDQTKVTLVFGNVREDDIL 251          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: MCR1_PICST (NADH-cytochrome b5 reductase 2 OS=Pichia stipitis GN=MCR1 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.609e-21
Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  207 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            + KL+    LSH+     FELP    V GL     +  +    +G  VI+PYTP +     G  + V+K Y  G+MS H  +++  D L+ KGP  +++++P Q ++  +  GG+GITP++Q+   I +    +T+V L Y + T  DIL
Sbjct:   53 DLKLISSHDLSHDTKHLVFELPNKDDVSGLVTASLLMTKFVTPKGSNVIRPYTPVSDTEQAGTIDFVVKKYEGGKMSSHIHDLKPNDTLSFKGPFVKWKWEPNQFKSIALIGGGTGITPLYQLIHEITKNPADKTQVSLFYGSQTPDDIL 202          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.102e-21
Identity = 63/170 (37.06%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  213 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVG-DYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-EKTQ*QTKVHLIYANVTYXDIL 656
            +LV + +LSH+V  F F LP+   VLGLP+G+HI  C   D  G+  ++ YTPT++  ++G FEL++K+Y +         G M+ +   ++VG   + VKGP G   Y          +  + R   M  G SGITPM+QV +A+L ++ + +T++HL+YAN +  DIL
Sbjct:  657 RLVDKKELSHDVRLFRFALPSSDQVLGLPVGKHIFVCATID--GKLCMRAYTPTSMVDEIGQFELLVKVYFRDEHPKFPNGGLMTQYLESLQVGSSSIDVKGPLGHVEYTGRGNFVINGKQRRARRLAMICGSSGITPMYQVIQAVLRDQPEDETEMHLVYANRSEDDIL 824          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.102e-21
Identity = 61/176 (34.66%), Postives = 95/176 (53.98%), Query Frame = 3
Query:  186 LDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQ----------PGQVRAFGMTAGGSGITPMFQVTRAILEKTQ*QTKVHLIYANVTYXDIL 656
            ++P      KL+++  +SH+V +F F LP+    LGLP+G+HI      +  +  ++ YTPT+    VG+ +LVIK+Y +         G MS H   + +G  L +KGP G   YQ          P       M AGG+GITP++QV ++IL   + +T++ ++YAN T  DIL
Sbjct:  651 VNPREKVPVKLIEKTSISHDVRRFRFALPSEDQQLGLPVGKHIFLCATIND-KLCLRAYTPTSTVDAVGYIDLVIKVYFKNVHPRFPNGGLMSQHPDSLPIGAVLDIKGPLGHIEYQGRGKFMVSGKPKFANKLAMLAGGTGITPIYQVIQSILSDPEDETEMFVVYANRTEDDIL 825          
BLAST of FC932241 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 62/176 (35.23%), Postives = 95/176 (53.98%), Query Frame = 3
Query:  189 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY---------PQGRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-EKTQ*QTKVHLIYANVTYXDIL 656
            +P      +LV +  +SHNV  F F LP+P   LGLP+G+H+      + G+  ++ YTPT+   +VGH EL+IK+Y           G MS +   + +G  + +KGP G   Y          +    R   M AGG+GITP++QV +A+L ++    T++HL+YAN T  D+L
Sbjct:  628 NPREKVRCRLVDKKSMSHNVRLFRFALPSPDQKLGLPVGKHVYVCA-STGGKLCMRAYTPTSSVEEVGHVELLIKIYFKDEDPKFPAGGLMSQYLDALPLGAPVDIKGPVGHIEYAGRGAFTVGGERRFARRLAMVAGGTGITPVYQVIQAVLRDQPDDTTEMHLVYANRTEDDML 802          
The following BLAST results are available for this feature:
BLAST of FC932241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NIA_BETVE3.242e-2237.50Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA2_ARATH5.531e-2237.13Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA1_SOYBN7.223e-2236.31Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
MCR1_ASHGO7.223e-2237.16NADH-cytochrome b5 reductase 2 OS=Ashbya gossypii ... [more]
NIA2_BRANA1.232e-2133.52Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
MCR1_CHAGB1.232e-2136.14NADH-cytochrome b5 reductase 2 OS=Chaetomium globo... [more]
MCR1_PICST1.609e-2133.33NADH-cytochrome b5 reductase 2 OS=Pichia stipitis ... [more]
NIA2_HORVU2.102e-2137.06Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]
NIA1_BRANA2.102e-2134.66Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA7_HORVU2.745e-2135.23Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34206C01EF PostHarveN Citrus clementina cDNA clone C34206C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932241 ID=FC932241; Name=FC932241; organism=Citrus clementina; type=EST; length=658bp
TATATACATATATTGACAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAG
CTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCA
GCTTCTCGTTGGTGGAGCTGTGGCTGTTCTGGCCATTGCTGTTGGTGCTG
CTTACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAAT
TTCAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGC
AAAGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAA
TTGGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTT
ATTAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGA
ATTGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTG
AGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTC
AGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTC
TGGCATCACTCCAATGTTCCAAGTTACTAGAGCCATATTAGAGAAAACCC
AATGACAGACAAAGGTGCACCTCATTTATGCCAATGTTACATATGANGAC
ATTCTTTT
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