FC932250

Overview
NameFC932250
Unique NameFC932250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 65/138 (47.10%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  257 PKFLKYGSPHPTLTSHTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQAR 670
            P  L+      T T    + + PET+++ L NGLRVA+E + +  T TVGVWIDAGSR+E+++ NG  +F+EH+ FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++LADI+QN + + ++
Sbjct:   24 PALLRSSDLRGTATYAQALQSVPETQVSQLDNGLRVASEQS-SQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQ 160          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 66/138 (47.83%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  257 PKFLKYGSPHPTLTSHTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQAR 670
            P  L+  +   T T    +   PET+++ L NGLRVA+E + +  T TVGVWID GSRFET++ NG  +FLEH+ FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++L DI+QN + + ++
Sbjct:   24 PALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQS-SQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQ 160          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.039e-31
Identity = 66/138 (47.83%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  257 PKFLKYGSPHPTLTSHTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQAR 670
            P  L+  +   T T    + + PET+++ L NGLRVA+E +  A T TVGVWIDAGSR+ET++ NG  +FLEH+ FKGT+ R    LE+E+E++G HLNAY++RE T Y  K L KD+   +++LADI+QNS+ + ++
Sbjct:   24 PALLRLPALRGTATFAQALQSVPETQVSILDNGLRVASEQSSHA-TCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQ 160          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 71/112 (63.39%), Postives = 81/112 (72.32%), Query Frame = 2
Query:  317 AAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNS 652
            AA  T    LPNG R+A+ES     T TVGVWIDAGSR+ET++ NG AHFLEHM FKGT KR+ +D+E  +E MG HLNAYTSRE T YY K   KDV  A+DILADIL NS
Sbjct:   23 AARPTLQNALPNGFRIASESK-DGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFKGTGKRSRQDIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNS 133          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.024e-31
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  323 PETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQA 667
            P T+ + LPNGL +ATE      +ATVG+++DAGSR E  + NGTAHFLEH+ FKGT+ R+ + +E EIEN+G HLNAYTSRE T YYAK L +D+  A+DIL+DIL  S  D +
Sbjct:   24 PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRSQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNS 138          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.560e-30
Identity = 63/138 (45.65%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  257 PKFLKYGSPHPTLTSHTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQAR 670
            P  L+  +   T T    + + PET+++ L NGLRVA+E + +  T TVGVWID GSR+ET++ NG  +FLEH+ FKGT+ R    LE+E+E++G HLNAY++RE T Y  K L KD+   +++LADI+QN + + ++
Sbjct:   24 PALLRLPALRGTATFVQALQSVPETQVSVLDNGLRVASEQS-SHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQ 160          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.270e-29
Identity = 69/123 (56.10%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  287 PTLTSHTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNST 655
            P L       A P+T+  TL NGL VATE +  A+TATV V +DAGSR ET + NG AHFLEH+ FKGT+ R+ + LE E EN G HLNAYTSREQT YYA      V  A+ +LADIL NS+
Sbjct:    8 PKLVRRFATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSS 130          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: YMXG_BACSU (Uncharacterized zinc protease ymxG OS=Bacillus subtilis GN=ymxG PE=3 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.167e-29
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 2
Query:  341 TLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQ 664
            T  NG+R+  E+N   ++  +GVWI  GSR ET E NG +HFLEHM FKGT  ++AR++ E  + +GG +NA+TS+E T YYAKVLD+   YALD+LAD+  +STFD+
Sbjct:    6 TCQNGVRIVLENNPTVRSVAIGVWIGTGSRHETPEINGISHFLEHMFFKGTSTKSAREIAESFDRIGGQVNAFTSKEYTCYYAKVLDEHANYALDVLADMFFHSTFDE 113          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: UCR1_CAEEL (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Caenorhabditis elegans GN=ucr-1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  311 ILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFD 661
            + +AP+ ++ TL NG RV TE N +A TATVGVWI+ GSRFE ++ NG AHFLE +I KGT KR +  LE E+  +G  LN++T R+QT  + +   +DV+  +DILAD+L+NS  +
Sbjct:   32 LASAPQAEVTTLKNGFRVVTEDNGSA-TATVGVWIETGSRFENEKNNGVAHFLERLIHKGTGKRASAALESELNAIGAKLNSFTERDQTAVFVQAGAQDVEKVVDILADVLRNSKLE 147          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y5738_STRCO (Uncharacterized zinc protease SCO5738 OS=Streptomyces coelicolor GN=SCO5738 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.113e-25
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  341 TLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQ 664
            TLP GLR+ TE+  + ++AT G+W   GSR ET   NG  H+LEH++FKGT KR+A D+   I+ +GG +NA+T++E T YYA+VLD D+  A+D++ D+L  S   +
Sbjct:   39 TLPGGLRIVTETLPSVRSATFGIWAHVGSRDETPALNGATHYLEHLLFKGTRKRSALDISSAIDAVGGEMNAFTAKEYTCYYARVLDTDLPLAIDVVCDMLTGSLIQE 146          
The following BLAST results are available for this feature:
BLAST of FC932250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
QCR1_BOVIN4.665e-3247.10Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_HUMAN7.957e-3247.83Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_MOUSE1.039e-3147.83Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_EUGGR1.357e-3163.39Ubiquinol-cytochrome-c reductase complex core prot... [more]
MPPB_YEAST3.024e-3156.52Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_RAT2.560e-3045.65Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_SCHPO1.270e-2956.10Probable mitochondrial-processing peptidase subuni... [more]
YMXG_BACSU2.167e-2952.78Uncharacterized zinc protease ymxG OS=Bacillus sub... [more]
UCR1_CAEEL1.007e-2649.57Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
Y5738_STRCO1.113e-2547.22Uncharacterized zinc protease SCO5738 OS=Streptomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206D02EF PostHarveN Citrus clementina cDNA clone C34206D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932250 ID=FC932250; Name=FC932250; organism=Citrus clementina; type=EST; length=672bp
GGTGAAAAGGAAACTCGAGACTTATCATCAGTGAGTCCAAACGATGGCGT
TTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCACAGGCCTTCGTCCACG
GCCCTCTTTACCGCCATCCGATCCTCCTCCTCCGCCTCACCCCTCGCCAC
GTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCCCCAAATGTCATGATCT
ACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCTCAAAAACCTAGAAAAC
CCCGACCCGAAGTTCTTAAAGTACGGATCCCCGCACCCAACCCTTACTTC
CCACACGCACATCCTCGCTGCGCCGGAGACCAAAATCGCGACTTTGCCTA
ACGGACTCCGCGTCGCCACCGAGTCGAACCTCGCCGCGAAGACGGCCACA
GTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCGAGACTGATGAGACGAA
CGGGACGGCTCATTTCTTGGAGCATATGATATTCAAGGGGACGGAGAAGC
GGACTGCGAGAGATTTGGAGGAGGAGATCGAGAATATGGGGGGGCATTTG
AATGCTTACACTAGCAGGGAACAGACGACCTATTATGCCAAGGTGTTGGA
TAAGGATGTGAAATATGCTTTGGATATTTTGGCAGATATTTTGCAGAACT
CGACGTTTGATCAAGCGAGGAT
back to top