FC932250

Overview
NameFC932250
Unique NameFC932250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  326 ETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTF 658
            +T+I TL NGL+VA+E+++    A++G+++D GS +ET  + G  H LE M FK T  R+   +  EIE +GG++ A  SRE   Y    L   V   +++LAD ++N  F
Sbjct:   74 KTQITTLANGLKVASEASVNP-AASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAF 183          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  332 KIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTF 658
            +I TLPNGL++A+E+      A++G+++D GS +E    +G  H LE M FK T  RT   L  EIE +GG+ +A  SREQ +Y    L   V   +++L D ++N  F
Sbjct:   79 QITTLPNGLKIASETT-PNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAF 186          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 2
Query:  302 HTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQ 646
            +++I      K+++L NGL+VAT SN     + +G++IDAGSRFE     G  H L+ + FK TE    R + E +E +GG+    +SRE   Y A V ++DV   L ++++ ++
Sbjct:   10 YSNIARTDNFKLSSLANGLKVAT-SNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVR 123          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_MOUSE (Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  326 ETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADIL 643
            ETK+ TL NGLRVA++ N   +  TVG+ I++GSR+E    +G AHFLE + F  T +  ++D +   +E  GG  +  TSR+ T Y      K +   +D+LAD++
Sbjct:   65 ETKVTTLDNGLRVASQ-NKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVDLLADVV 170          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_BOVIN (Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  326 ETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADIL 643
            ETK+ TL NGLRVA++ N   +  TVG+ I++GSR+E    +G AHFLE + F  TE+  ++D +   +E  GG  +  TSR+ T Y      K +   + +LAD++
Sbjct:   66 ETKVTTLDNGLRVASQ-NKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTERFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVV 171          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA1_DICDI (Mitochondrial-processing peptidase subunit alpha-1 OS=Dictyostelium discoideum GN=mppA1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 36/113 (31.86%), Postives = 71/113 (62.83%), Query Frame = 2
Query:  326 ETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTFDQ 664
            + +I+TLPNG+RV ++       A +G++I+AG+++E+ +  G  + LE M FK T+  +  ++ +E+E +  +  A +SRE      +VL KD+++ L IL+D +++ T+ +
Sbjct:  143 KAEISTLPNGIRVVSKQTHEGVCA-IGLYINAGTKYESPQDRGVFNLLEKMTFKETKNNSTSEIIKELEEISMNAMASSSREMINVSLEVLRKDLEFVLSILSDQIKSPTYSE 254          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_PONAB (Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  326 ETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADIL 643
            ETK+ TL NGLRVA++ N   +  TVG+ I++GSR+E    +G AHFLE + F  T +  ++D +   +E  GG  +  TSR+ T Y      K +   + +LAD++
Sbjct:   66 ETKVTTLDNGLRVASQ-NKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVV 171          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  326 ETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADIL 643
            ETK+ TL NGLRVA++ N   +  TVG+ I++GSR+E    +G AHFLE + F  T +  ++D +   +E  GG  +  TSR+ T Y      K +   + +LAD++
Sbjct:   66 ETKVTTLDNGLRVASQ-NKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVV 171          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_RAT (Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  326 ETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADIL 643
            ETK+ TL NGLRVA++ N   +  T+G+ I++GSR+E    +G AHFLE + F  T +  ++D +   +E  GG  +  TSR+ T Y      K +   + +LAD++
Sbjct:   65 ETKVTTLDNGLRVASQ-NKFGQFCTLGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVV 170          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_SCHPO (Probable mitochondrial-processing peptidase subunit alpha OS=Schizosaccharomyces pombe GN=mas2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 35/107 (32.71%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  317 AAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILAD 637
            A  E +   L NG+    +       + +GV++ AGSR+ET + +G +HF++ + F+ TE+    +++ ++EN+GG+    TSRE   Y A V + DVK    +LA+
Sbjct:   42 ALNEVRTEKLKNGVTYVCDPR-PGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAE 147          
The following BLAST results are available for this feature:
BLAST of FC932250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MPPA_SOLTU1.508e-1438.74Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH1.969e-1439.45Probable mitochondrial-processing peptidase subuni... [more]
MPPA_YEAST4.386e-1435.65Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_MOUSE3.713e-1339.25Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BOVIN4.850e-1339.25Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_DICDI1.411e-1231.86Mitochondrial-processing peptidase subunit alpha-1... [more]
MPPA_PONAB2.407e-1238.32Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_HUMAN3.143e-1238.32Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_RAT5.362e-1237.38Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_SCHPO2.038e-1132.71Probable mitochondrial-processing peptidase subuni... [more]

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Properties
Property NameValue
Genbank descriptionC34206D02EF PostHarveN Citrus clementina cDNA clone C34206D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932250 ID=FC932250; Name=FC932250; organism=Citrus clementina; type=EST; length=672bp
GGTGAAAAGGAAACTCGAGACTTATCATCAGTGAGTCCAAACGATGGCGT
TTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCACAGGCCTTCGTCCACG
GCCCTCTTTACCGCCATCCGATCCTCCTCCTCCGCCTCACCCCTCGCCAC
GTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCCCCAAATGTCATGATCT
ACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCTCAAAAACCTAGAAAAC
CCCGACCCGAAGTTCTTAAAGTACGGATCCCCGCACCCAACCCTTACTTC
CCACACGCACATCCTCGCTGCGCCGGAGACCAAAATCGCGACTTTGCCTA
ACGGACTCCGCGTCGCCACCGAGTCGAACCTCGCCGCGAAGACGGCCACA
GTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCGAGACTGATGAGACGAA
CGGGACGGCTCATTTCTTGGAGCATATGATATTCAAGGGGACGGAGAAGC
GGACTGCGAGAGATTTGGAGGAGGAGATCGAGAATATGGGGGGGCATTTG
AATGCTTACACTAGCAGGGAACAGACGACCTATTATGCCAAGGTGTTGGA
TAAGGATGTGAAATATGCTTTGGATATTTTGGCAGATATTTTGCAGAACT
CGACGTTTGATCAAGCGAGGAT
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