FC932253

Overview
NameFC932253
Unique NameFC932253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.262e-43
Identity = 96/178 (53.93%), Postives = 117/178 (65.73%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            MFL DWF+ VL+ LGL+ K AKILFLGLDNAGK TLL +LKD RL  + PT +PTSEEL++G I+FKAFDLGGH+ ARR+W                   +RF ESKK            NVPFL+LGNK+DI    SEE+    LGL+  TTGKGK  L  + VRP+EVFMCS+V++
Sbjct:    1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIG-NTSEEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCSVVKR 174          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.955e-43
Identity = 94/178 (52.81%), Postives = 112/178 (62.92%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            M++ DWF  +LASLGLW K AK+LFLGLDNAGK TLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL   LGL N TTGK    L +   RP+EVFM S+V +
Sbjct:    1 MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMR 176          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.583e-43
Identity = 97/175 (55.43%), Postives = 110/175 (62.86%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI 609
            M++L+WF  VLASLGLW K AK+LFLGLDNAGK TLLHMLK++RL   QPT +PTSEELSIG ++F  FDLGGH+ ARRVW                   ERF ES+              VP LVLGNKID   A SE EL + LGL   TTGK KV L +   RPLEVF CSI
Sbjct:    1 MWVLNWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMT-TTGKDKVQLVEGQ-RPLEVFTCSI 173          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 6.583e-43
Identity = 93/178 (52.25%), Postives = 112/178 (62.92%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            M++ DWF  +L+SLGLW K AK+LFLGLDNAGK TLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL   LGL N TTGK    L +   RP+EVFM S+V +
Sbjct:    1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVSVVMR 176          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 94/178 (52.81%), Postives = 115/178 (64.61%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            M+L++WFY +LASLGL  K AK+LFLGLDNAGK TLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   E F ESK              VPFL+LGNKID P A SE+++ + LGL   TTGKGKV L    +RP+EVFMCS+V +
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMR 175          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.123e-42
Identity = 96/178 (53.93%), Postives = 111/178 (62.36%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            M+L DWF  VLASLGLW K AK+LFLGLDNAGK TLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID   A  E EL   LGL N TTGK    L +   RP+EVFM S+V +
Sbjct:    1 MWLFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMR 176          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.466e-42
Identity = 93/181 (51.38%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ DW Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE L    GL   TTGKG V+L + N RPLEVFMCS++++
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR 183          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.915e-42
Identity = 94/176 (53.41%), Postives = 112/176 (63.64%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV 612
            MF+++WFY  LA LGL  K AK+LFLGLDNAGK TLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ER +ESK              VPFL+LGNKID P A SE+EL   LGL   TTGKG V+     +RP+EVFMCS+V
Sbjct:    1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQ-TTGKG-VSKPVPGIRPIEVFMCSVV 174          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.915e-42
Identity = 93/181 (51.38%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ DW Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE L    GL   TTGKG V+L + N RPLEVFMCS++++
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR 183          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.915e-42
Identity = 93/181 (51.38%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ DW Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE L    GL   TTGKG V+L + N RPLEVFMCS++++
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR 183          
The following BLAST results are available for this feature:
BLAST of FC932253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1A_DICDI2.262e-4353.93GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1_LODEL2.955e-4352.81Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_PICPG6.583e-4355.43Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1_CANAL6.583e-4352.25Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1_ASPNG8.597e-4352.81Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_DEBHA1.123e-4253.93Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1B_MOUSE1.466e-4251.38GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1_SCHPO1.915e-4253.41Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR1B_RAT1.915e-4251.38GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG1.915e-4251.38GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]

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Properties
Property NameValue
Genbank descriptionC34206D05EF PostHarveN Citrus clementina cDNA clone C34206D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932253 ID=FC932253; Name=FC932253; organism=Citrus clementina; type=EST; length=620bp
ACGATCTGATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATC
CGTTTTCGTTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACT
GGTTCTACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAG
ATCTTGTTTTTAGGGCTTGATAATGCTGGAAAAGCAACGTTGCTTCACAT
GTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACAT
CGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGA
GGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGA
TGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAAT
CAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTT
CCTTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGA
GGAAGAGTTGTGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGG
GGAAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATG
TGTAGCATAGTTCGCAAAAT
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