FC932253

Overview
NameFC932253
Unique NameFC932253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.915e-42
Identity = 93/181 (51.38%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ DW Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE L    GL   TTGKG V+L + N RPLEVFMCS++++
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKR 183          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.501e-42
Identity = 92/181 (50.83%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ DW Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE L    GL   TTGKG ++L + N RPLEVFMCS++++
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKR 183          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.501e-42
Identity = 93/181 (51.38%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ DW Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE L    GL   TTGKG V+L + N RPLEVFMCS++++
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR 183          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.267e-42
Identity = 92/178 (51.69%), Postives = 112/178 (62.92%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            M+L  WFY +L++LGL  K  K+LFLGLDNAGK TLLHMLK++R+   QPT +PTSEELS+G +KF  FDLGGHQ ARR+W                   ER  E+K              VPF+VLGNKID P A SE+EL   LGL   TTGKG+V L    +RP+EVFMCS+V +
Sbjct:    1 MWLWSWFYDILSNLGLLNKHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQ-TTGKGRVPL--EGIRPIEVFMCSVVMR 175          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.621e-41
Identity = 94/178 (52.81%), Postives = 109/178 (61.24%), Query Frame = 1
Query:   85 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            M++ DWF  VLASLGLW K AK+LFLGLDNAGK TLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ER AESK              VPFL+LGNKID   A  E EL   LGL N TTGK    L +   RP+EVFM S+V +
Sbjct:    1 MWIFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN-TTGKDVTKLPEGQ-RPIEVFMVSVVMR 176          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.161e-41
Identity = 85/177 (48.02%), Postives = 110/177 (62.15%), Query Frame = 1
Query:   88 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            FL DWF GVL  LGL  K+ K++FLGLDNAGK TLLHMLKD+R+ QH PT +PTSE++S+G I F  +DLGGH  ARRVW                   ER  ES+             +VP L+LGNKID P A SE++L + L + +  TGKG V+  +   RP+EVFMCS++++
Sbjct:    3 FLWDWFNGVLNMLGLANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQR 179          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.341e-40
Identity = 89/181 (49.17%), Postives = 108/181 (59.67%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ +W Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+L    GL   TTGKG V L + N RP+EVFMCS++++
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.341e-40
Identity = 89/181 (49.17%), Postives = 108/181 (59.67%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ +W Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+L    GL   TTGKG V L + N RP+EVFMCS++++
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.058e-40
Identity = 92/176 (52.27%), Postives = 106/176 (60.23%), Query Frame = 1
Query:   91 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            L  WF  +L+SLGLW K  K+LFLGLDNAGK TLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             NVPF VLGNKID P A SE EL   LGL N TTG  K+       RP+E+FMCS+V K
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKI----EGQRPIELFMCSVVMK 176          
BLAST of FC932253 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.994e-40
Identity = 89/181 (49.17%), Postives = 108/181 (59.67%), Query Frame = 1
Query:   88 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKATLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELCYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK 618
            F+ +W Y     VL  LGL++K  K++FLGLDNAGK TLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+L    GL   TTGKG V L + N RP+EVFMCS++++
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183          
The following BLAST results are available for this feature:
BLAST of FC932253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1B_BOVIN1.915e-4251.38GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1B_HUMAN2.501e-4250.83GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR2.501e-4251.38GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1_NEUCR4.267e-4251.69Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_PICGU1.621e-4152.81Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_CAEEL6.161e-4148.02GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1A_PONAB2.341e-4049.17GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN2.341e-4049.17GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1_KLULA3.058e-4052.27Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1A_PIG3.994e-4049.17GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206D05EF PostHarveN Citrus clementina cDNA clone C34206D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932253 ID=FC932253; Name=FC932253; organism=Citrus clementina; type=EST; length=620bp
ACGATCTGATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATC
CGTTTTCGTTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACT
GGTTCTACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAG
ATCTTGTTTTTAGGGCTTGATAATGCTGGAAAAGCAACGTTGCTTCACAT
GTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACAT
CGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGA
GGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGA
TGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAAT
CAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTT
CCTTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGA
GGAAGAGTTGTGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGG
GGAAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATG
TGTAGCATAGTTCGCAAAAT
back to top