FC932263

Overview
NameFC932263
Unique NameFC932263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 71/136 (52.21%), Postives = 91/136 (66.91%), Query Frame = 3
Query:  246 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVD 653
            +YP++DV  P   ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAK  E+                   +  E+ +DQK VD
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAK--EKLTKKEKKEANLFPEQQTKEIKTERVEDQKVVD 142          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.877e-31
Identity = 70/136 (51.47%), Postives = 90/136 (66.18%), Query Frame = 3
Query:  246 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVD 653
            +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAK  E+                   +  E+ +DQK VD
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAK--EKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVD 142          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.436e-27
Identity = 68/140 (48.57%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  246 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTST-KVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            +YPA     P   ++  +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL    L+V+GP+K+NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFAK+ +R                   LP E+  DQK+VD  +
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKL 164          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.291e-26
Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  285 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            K+  +   LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V    +D YFA E +                    +   +  DQKSVD+ I
Sbjct:   79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAI 205          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.082e-25
Identity = 79/211 (37.44%), Postives = 108/211 (51.18%), Query Frame = 3
Query:   57 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKR-------KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            M  K+  P +SRN +L  G+ +FS S++  K+G    K                         F      K P + +          K   LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q +VI TS KV++SGV + +  +D+YF +   +                   + +++K D K+VD PI
Sbjct:    1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKKPK-------------------------FTKDTSAKLPKLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKR---KSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPI 183          
The following BLAST results are available for this feature:
BLAST of FC932263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6B_YEAST5.981e-3252.2160S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST3.877e-3151.4760S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_SCHPO4.436e-2748.5760S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_DICDI1.291e-2651.9760S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_CAEEL7.082e-2537.4460S ribosomal protein L6 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC34206F01EF PostHarveN Citrus clementina cDNA clone C34206F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932263 ID=FC932263; Name=FC932263; organism=Citrus clementina; type=EST; length=665bp
GACGCTCGCACACGAAACTCTCATTCACGGAGGCACAGCAGAAGCGGGTA
GCATCAATGGCGCCGAAGCAAGGGAAGCCAAGAGTGAGCAGGAATCCGGA
GCTGATCCGAGGAATTGGAAAGTTCTCTCGTTCAAAGATGTACCATAAGA
GGGGTCTGTGGGCAATTAAAGCCAAAAACGGTGGCGTCTTTCCTCGTCAC
GACCCTAAGCCCAAAGCCGCTGCTCCCGCCGAGAAGCCCCCCAAGTTTTA
CCCCGCCGATGACGTCAAGAAACCACTCGTCAACAAGCGCAAGCCTAAAC
CCACCAAGCTTAGAGCAAGCATCACCCCAGGGACAGTGCTGATTATACTA
GCTGGAAGGTTCAAGGGTAAGAGAGTTGTGTTCCTGAAGCAGCTTCCATC
TGGGTTGCTTCTAGTTTCTGGGCCATTTAAGATCAATGGTGTTCCTTTAC
GACGTGTGAACCAGACTTACGTGATTGGAACTTCTACCAAAGTTGATATC
TCCGGAGTGAATGTGGATAAGTTTGATGATAAGTATTTTGCCAAGGAAGT
CGAGAGGAAGAAGAAGAAAGGAGAGAATGAGTTCTTTGGGTCAGAGAAAG
AGGAGAAGAAGTCGCTTCCTCAGGAGAAGAAGGATGATCAGAAGTCCGTT
GATACACCCATTGAT
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