FC932263
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32 Identity = 71/136 (52.21%), Postives = 91/136 (66.91%), Query Frame = 3 Query: 246 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVD 653 +YP++DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LLV+GPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAK E+ + E+ +DQK VD Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAK--EKLTKKEKKEANLFPEQQTKEIKTERVEDQKVVD 142
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 3.877e-31 Identity = 70/136 (51.47%), Postives = 90/136 (66.18%), Query Frame = 3 Query: 246 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVD 653 +YP++DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LL+SGPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAK E+ + E+ +DQK VD Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAK--EKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVD 142
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 4.436e-27 Identity = 68/140 (48.57%), Postives = 89/140 (63.57%), Query Frame = 3 Query: 246 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTST-KVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 +YPA P ++ +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL L+V+GP+K+NGVP+RRVN YVI TS K+D+SGV+V+KF YFAK+ +R LP E+ DQK+VD + Sbjct: 27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKL 164
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.291e-26 Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 3 Query: 285 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 K+ + LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V +D YFA E + + + DQKSVD+ I Sbjct: 79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAI 205
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.082e-25 Identity = 79/211 (37.44%), Postives = 108/211 (51.18%), Query Frame = 3 Query: 57 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKR-------KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 M K+ P +SRN +L G+ +FS S++ K+G K F K P + + K LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q +VI TS KV++SGV + + +D+YF + + + +++K D K+VD PI Sbjct: 1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKKPK-------------------------FTKDTSAKLPKLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKR---KSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPI 183 The following BLAST results are available for this feature:
BLAST of FC932263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932263 ID=FC932263; Name=FC932263; organism=Citrus clementina; type=EST; length=665bpback to top |