FC932264

Overview
NameFC932264
Unique NameFC932264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_SOLLC (Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.519e-52
Identity = 108/245 (44.08%), Postives = 157/245 (64.08%), Query Frame = 2
Query:    2 INRLVAIRAQADIMGSDLLAIARTDSEAATLITSTIDHRDHAFIVGSTNPSIQP--LNDLMVAAEQAGKNGAQLQAIEDQWTTEAGLKLFNEAVIDTINAGSNAN--KKNLIDQYLAAS---KGKSNTESRAIAKNLTGVDIIWNWESPRTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNW-KKAMPREEQETYITRLGQLGYSWQFIT 712
            INRLVA R Q D+MG++ + +ARTD+ AATLI + +D RDH FI+G++NP+++   L   +  A  AGK G +LQAIED W   A LK F++ V D I   + A   K+  +++++  S   K  S+ ++R +A+ L   ++ W+W+ PRTREGFYR+QG  + A+ R  A+A + DL+WME+  PD  +  +F+ GV  + PE  LAYNLSPSFNW    M   +   +I R+ +LGY WQFIT
Sbjct:  228 INRLVAARLQFDVMGTETVLVARTDAVAATLIQTNVDTRDHQFILGASNPNLKGKGLATHLSEAMAAGKTGPELQAIEDNWLGMAELKTFSQCVTDAIKKMNLAEYEKQRKLNEWMNHSSYEKCLSHEQAREVAERLGLPNLFWDWDLPRTREGFYRFQGSVEAAIVRGWAFAEYCDLVWMETSSPDMVECTKFSQGVKTLRPELMLAYNLSPSFNWDASGMNDNQMMDFIPRIAKLGYCWQFIT 472          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEB_YEAST (Mitochondrial 2-methylisocitrate lyase OS=Saccharomyces cerevisiae GN=ICL2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.321e-35
Identity = 80/240 (33.33%), Postives = 137/240 (57.08%), Query Frame = 2
Query:    8 RLVAIRAQADIMGSDLLAIARTDSEAATLITSTIDHRDHAFIVGSTNPSIQPLNDLMVAAEQAGKNGAQLQAIEDQWTTEAGLKLFNEAVIDTINAGSNANKKNLIDQYLAASKGK---SNTESRAIAKNLTGVD-IIWNWESPRTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWK-KAMPREEQETYITRLGQLGYSWQFIT 712
            RL++ R Q DIMG++ L IARTDS    L++S+ D RDH FI G    ++ P ++ ++  E      + +  +E +W  E  L  F EA+     A    + K   +  +    G+   S  E + +A+ +T +  II++W++PRT+EG+Y + G  + A+ R++ +AP++D+IW+E+K PD  QA+ F+  +H   P  KL YNLSPSFNW       +  ++++  L + G++ Q ++
Sbjct:  255 RLISTRFQWDIMGTENLVIARTDSCNGKLLSSSSDPRDHEFIRGIIRDNVVPWSEKLIEMEDKKIPNSAIADMEKEWYHENELFTFEEALEKQFTASEFESYKEKKEDLMVNKLGRAYLSLREMKLLAQEVTPLKKIIFDWDAPRTKEGYYMFNGCIEAAIRRSLVFAPYSDMIWLETKTPDLEQARSFSRKIHKQLPATKLVYNLSPSFNWSAHGFDDKALKSFVWDLAKEGFTLQLVS 494          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_MYCLE (Isocitrate lyase OS=Mycobacterium leprae GN=aceA PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 103/296 (34.80%), Postives = 148/296 (50.00%), Query Frame = 2
Query:    2 INRLVAIRAQADIMGSDLLAIARTDSEAATLITSTIDHRDHAFIVGSTN---PS------------------------IQPLNDLMVAAEQAG------------------KNGAQLQAIED-----------QWTTEAGLKLFNEAVIDTINAGSNANKK-NLIDQYLAASKGKSNT-ESRAIAKNLTGVDIIWNWESPRTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNW-KKAMPREEQETYITRLGQLGYSWQFIT 712
            I RL A R Q DIM    + +ARTD+EAA LI S  D RD  F++G+TN   PS                        +  L D   AA  A                   +NG Q  +I+D            W  +AGL  + EAV + +  G +  +   +  +      G+++   +R  AK L GVD  W+ E  +T EG+Y+ +GG Q A+ +++A APFAD++WME+K  D   A++FA+ +HA +PEQ LAYNLSPSFNW    M  EE + +   LG++G+ + FIT
Sbjct:  226 IKRLNAARFQLDIMRVPGIIVARTDAEAANLIDSRADERDQPFLLGATNLKIPSYKACFLALVRCFYELGVKELHGHLLYALGDGEYAAASAWLDRQGILAQVSGTVNAWQENGKQ--SIDDLFEQVEYRLLAAWEKDAGLMTYGEAVEEMLQFGESEGELIGMSPEEWRRFVGRASLYAAREKAKEL-GVDPGWDCELAKTPEGYYQIRGGIQYAIAKSLAAAPFADILWMETKTADLADARQFAEAIHAEFPEQMLAYNLSPSFNWDTTGMSDEEMKRFPEELGKMGFVFNFIT 518          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEB_SCHPO (Mitochondrial 2-methylisocitrate lyase OS=Schizosaccharomyces pombe GN=icl2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 73/238 (30.67%), Postives = 124/238 (52.10%), Query Frame = 2
Query:    2 INRLVAIRAQADIMGSDLLAIARTDSEAATLITSTIDHRDHAFIVGSTNPSIQPLNDLMVAAEQAGKNGAQLQAIEDQWTTEAGLKLFNEAVIDTINAGSNANKKNLIDQYLAASKGK---SNTESRAIAKNLTGVDIIWNWESPRTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITR-LGQLGYSWQ 703
            + RL A+R Q DIM ++ + + R D++ A  ITS +D RDHA+++G+T      +  L+ A + A   G  ++   + W   A L  F+EAV  T       N       Y++A   K   S +E + +A+     ++ ++WE PR+ +G Y ++   Q  + RAIA AP  ++ W     P +   K F +GV AV+P++  A+  + ++++K A   EEQ   +T  + +LG  WQ
Sbjct:  221 LRRLTAVRLQFDIMKAETMLLCRCDTDHAEFITSVVDPRDHAYVLGATTK----IESLIKALKDAESTGVSMKKARENWIERAKLMTFDEAVKSTATPKEYEN-------YISAISKKPFHSISERQELAEKYLSNEVFFDWELPRSSDGQYFFKPTVQTVIERAIAAAPLGEMTWARMDYPKWQDIKAFHEGVRAVYPDRMFAFGFTGNYDFKAAGFSEEQLRNLTSDMAKLGVCWQ 447          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_BACHD (Isocitrate lyase OS=Bacillus halodurans GN=aceA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  428 RTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            RT EGFYR   G + A+ R +AYAP+ADLIW E+  P   +AK+FAD +H  +P + LAYN SPSFNW+  + R   ET+   LG++GY +QF+T
Sbjct:  250 RTPEGFYRTNAGIEQAIARGLAYAPYADLIWCETSKPSLEEAKQFADAIHEKFPGKLLAYNCSPSFNWEANLDRATIETFQQELGKMGYKFQFVT 344          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: GCP_CAEEL (Bifunctional glyoxylate cycle protein OS=Caenorhabditis elegans GN=gei-7 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  413 NWESPRTREGFYRYQGGT--QCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            ++E+ RT EGFYR +  T  Q  ++RAI YAP+ DLIWME+  P    A+EFA+GVH  +P++  AYN SPSFNWKK +   + E +   LG +G+ +QFIT
Sbjct:  249 DYEAGRTIEGFYRLKDSTAIQYCIDRAIQYAPYTDLIWMETSHPTIADAREFAEGVHKQYPDKMFAYNCSPSFNWKKHLSPSQMEKFQKELGAMGFKYQFIT 350          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_SALTY (Isocitrate lyase OS=Salmonella typhimurium GN=aceA PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  428 RTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            RT EGFYR   G + A++R +AYAP+ADL+W E+  PD   A+ FAD +HA +P + LAYN SPSFNW+K +  +   ++  +L  +GY +QFIT
Sbjct:  257 RTSEGFYRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFADAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKYQFIT 351          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_MYCTU (Isocitrate lyase OS=Mycobacterium tuberculosis GN=icl PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  428 RTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            RTREGFYR + G +  + RA AYAPFADLIWME+  PD   A++F++ V A +P+Q LAYN SPSFNWKK +       +   L  +G+ +QFIT
Sbjct:  253 RTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNWKKHLDDATIAKFQKELAAMGFKFQFIT 347          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_MYCBO (Isocitrate lyase OS=Mycobacterium bovis GN=icl PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  428 RTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            RTREGFYR + G +  + RA AYAPFADLIWME+  PD   A++F++ V A +P+Q LAYN SPSFNWKK +       +   L  +G+ +QFIT
Sbjct:  253 RTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNWKKHLDDATIAKFQKELAAMGFKFQFIT 347          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_ECOLI (Isocitrate lyase OS=Escherichia coli (strain K12) GN=aceA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  428 RTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            RT EGF+R   G + A++R +AYAP+ADL+W E+  PD   A+ FA  +HA +P + LAYN SPSFNW+K +  +   ++  +L  +GY +QFIT
Sbjct:  257 RTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFIT 351          
The following BLAST results are available for this feature:
BLAST of FC932264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACEA_SOLLC4.519e-5244.08Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1[more]
ACEB_YEAST1.321e-3533.33Mitochondrial 2-methylisocitrate lyase OS=Saccharo... [more]
ACEA_MYCLE6.136e-3334.80Isocitrate lyase OS=Mycobacterium leprae GN=aceA P... [more]
ACEB_SCHPO4.116e-2930.67Mitochondrial 2-methylisocitrate lyase OS=Schizosa... [more]
ACEA_BACHD5.756e-2350.53Isocitrate lyase OS=Bacillus halodurans GN=aceA PE... [more]
GCP_CAEEL7.518e-2349.02Bifunctional glyoxylate cycle protein OS=Caenorhab... [more]
ACEA_SALTY2.857e-2248.42Isocitrate lyase OS=Salmonella typhimurium GN=aceA... [more]
ACEA_MYCTU6.364e-2251.58Isocitrate lyase OS=Mycobacterium tuberculosis GN=... [more]
ACEA_MYCBO6.364e-2251.58Isocitrate lyase OS=Mycobacterium bovis GN=icl PE=... [more]
ACEA_ECOLI5.388e-2146.32Isocitrate lyase OS=Escherichia coli (strain K12) ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206F02EF PostHarveN Citrus clementina cDNA clone C34206F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932264 ID=FC932264; Name=FC932264; organism=Citrus clementina; type=EST; length=712bp
GATCAACCGCCTGGTTGCTATCCGCGCCCAGGCTGATATCATGGGCTCCG
ATCTCCTGGCCATTGCCCGCACCGACTCCGAGGCCGCCACCCTCATCACA
TCGACCATCGACCACCGCGACCACGCCTTTATCGTCGGCTCCACAAACCC
CAGCATACAGCCCCTCAACGACCTCATGGTGGCCGCCGAACAGGCCGGCA
AGAACGGCGCCCAGCTGCAGGCAATCGAGGATCAATGGACTACCGAGGCG
GGCCTCAAGCTCTTCAACGAAGCCGTCATCGACACCATCAACGCCGGCTC
TAACGCCAACAAGAAAAACCTCATCGATCAGTATCTCGCTGCCTCCAAGG
GCAAGAGCAACACCGAATCCCGCGCCATCGCCAAGAATCTCACCGGCGTC
GACATCATCTGGAACTGGGAATCTCCCCGTACCCGCGAGGGCTTCTACCG
CTACCAGGGCGGCACGCAGTGCGCCGTCAACCGCGCCATCGCATACGCTC
CTTTTGCCGATCTGATCTGGATGGAGAGCAAGCTGCCCGACTACAACCAG
GCCAAGGAATTCGCCGACGGCGTTCACGCCGTATGGCCCGAACAAAAACT
CGCCTACAATCTCTCCCCGTCCTTCAACTGGAAGAAGGCTATGCCCCGCG
AAGAGCAGGAGACGTACATCACGCGTCTCGGCCAGCTCGGCTACTCGTGG
CAATTCATCACC
back to top