FC932264

Overview
NameFC932264
Unique NameFC932264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_ECOL6 (Isocitrate lyase OS=Escherichia coli O6 GN=aceA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  428 RTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            RT EGF+R   G + A++R +AYAP+ADL+W E+  PD   A+ FA  +HA +P + LAYN SPSFNW+K +  +   ++  +L  +GY +QFIT
Sbjct:  257 RTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFIT 351          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_CORGL (Isocitrate lyase OS=Corynebacterium glutamicum GN=aceA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  428 RTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            RT EG+Y  + G +  + RA +YAP+AD+IWME+  PD   AK+FA+GV + +P+Q L+YN SPSFNW   +  +E   +   LG +G+ +QFIT
Sbjct:  255 RTAEGYYHVKNGLEPCIARAKSYAPYADMIWMETGTPDLELAKKFAEGVRSEFPDQLLSYNCSPSFNWSAHLEADEIAKFQKELGAMGFKFQFIT 349          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_COREF (Isocitrate lyase OS=Corynebacterium efficiens GN=aceA PE=3 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  428 RTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            RT EG+Y  + G +  + RA +YAP+AD+IWME+  PD   AK+FA+GV + +P+Q L+YN SPSFNW   +  +E   +   LG +G+ +QFIT
Sbjct:  255 RTAEGYYHVKPGLEPCIARAKSYAPYADMIWMETGTPDLELAKKFAEGVRSEFPDQLLSYNCSPSFNWSAHLEADEIAKFQKELGAMGFKFQFIT 349          
BLAST of FC932264 vs. ExPASy Swiss-Prot
Match: ACEA_RHOFA (Isocitrate lyase OS=Rhodococcus fascians GN=icl PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  419 ESPRTREGFYRYQGGTQCAVNRAIAYAPFADLIWMESKLPDYNQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYITRLGQLGYSWQFIT 712
            +  RT EGF+  + G +  + RA AYAP+ADLIWME+ +PD   AK+F++ V + +P+Q LAYN SPSFNWK  +       +   LG +G+ +QFIT
Sbjct:  250 DGTRTAEGFFGVKNGIEPCIARAKAYAPYADLIWMETGVPDLEVAKKFSESVRSEFPDQLLAYNWSPSFNWKAHLDDATIAKFQKELGAMGFKFQFIT 347          
The following BLAST results are available for this feature:
BLAST of FC932264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACEA_ECOL65.388e-2146.32Isocitrate lyase OS=Escherichia coli O6 GN=aceA PE... [more]
ACEA_CORGL2.047e-2046.32Isocitrate lyase OS=Corynebacterium glutamicum GN=... [more]
ACEA_COREF3.492e-2046.32Isocitrate lyase OS=Corynebacterium efficiens GN=a... [more]
ACEA_RHOFA1.327e-1945.92Isocitrate lyase OS=Rhodococcus fascians GN=icl PE... [more]

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Properties
Property NameValue
Genbank descriptionC34206F02EF PostHarveN Citrus clementina cDNA clone C34206F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932264 ID=FC932264; Name=FC932264; organism=Citrus clementina; type=EST; length=712bp
GATCAACCGCCTGGTTGCTATCCGCGCCCAGGCTGATATCATGGGCTCCG
ATCTCCTGGCCATTGCCCGCACCGACTCCGAGGCCGCCACCCTCATCACA
TCGACCATCGACCACCGCGACCACGCCTTTATCGTCGGCTCCACAAACCC
CAGCATACAGCCCCTCAACGACCTCATGGTGGCCGCCGAACAGGCCGGCA
AGAACGGCGCCCAGCTGCAGGCAATCGAGGATCAATGGACTACCGAGGCG
GGCCTCAAGCTCTTCAACGAAGCCGTCATCGACACCATCAACGCCGGCTC
TAACGCCAACAAGAAAAACCTCATCGATCAGTATCTCGCTGCCTCCAAGG
GCAAGAGCAACACCGAATCCCGCGCCATCGCCAAGAATCTCACCGGCGTC
GACATCATCTGGAACTGGGAATCTCCCCGTACCCGCGAGGGCTTCTACCG
CTACCAGGGCGGCACGCAGTGCGCCGTCAACCGCGCCATCGCATACGCTC
CTTTTGCCGATCTGATCTGGATGGAGAGCAAGCTGCCCGACTACAACCAG
GCCAAGGAATTCGCCGACGGCGTTCACGCCGTATGGCCCGAACAAAAACT
CGCCTACAATCTCTCCCCGTCCTTCAACTGGAAGAAGGCTATGCCCCGCG
AAGAGCAGGAGACGTACATCACGCGTCTCGGCCAGCTCGGCTACTCGTGG
CAATTCATCACC
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