FC932266

Overview
NameFC932266
Unique NameFC932266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_OLICO (Flavoprotein wrbA OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.983e-32
Identity = 80/200 (40.00%), Postives = 106/200 (53.00%), Query Frame = 2
Query:   86 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            TKV ++YYS YGH+E +A  + +GA    G    + +VPE +P EV            P+    +LA  D  + G+ TRFG M++Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y F AG   +++V GG+PYGA T   GDGSR P+E EL  A +QG+ IA   KKL G
Sbjct:    2 TKVLVLYYSAYGHIEAMANAVAEGAREA-GASVDIKRVPELVPAEVAKAAHFKLDQAAPVAKVEDLANYDAIIVGTGTRFGRMSSQMANFLDQAGGLWAKGALHGKVGGAFTSTATQHGGQEMTLFSIITNLLHFGMVVVGLNYGF-AGQMGVKEVTGGAPYGATTITDGDGSRLPSENELNGARYQGRTIAETAKKLHG 199          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_RHOP5 (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisA53) GN=wrbA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 80/199 (40.20%), Postives = 108/199 (54.27%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYS YGH+E +A+ + +GA +  G    + +VPE +P EV            P+ + ++LA  D  + G+ TRFG MA+Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y F AG   +++V GGSPYGA T  G DGSRQP+  EL  A +QG+ IA    KL G
Sbjct:    3 KVLVLYYSAYGHIETMAQAVAEGARAA-GATVDIKRVPELVPAEVAKASHYKLDQAAPVASIDDLANYDAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALHGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGF-AGQMTLDEVTGGSPYGATTITGGDGSRQPSANELAGARYQGQVIAETAIKLHG 199          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPB (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisB18) GN=wrbA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.298e-31
Identity = 78/199 (39.20%), Postives = 106/199 (53.27%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYS YGH+E +A  + +GA    G    + +VPE +P E+            PI T ++LA  D  + G+ TRFG + +Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y +G G+  +++V GGSPYGA T   GDG+RQP+  EL  A +QGK IA    KL G
Sbjct:    3 KVLVLYYSAYGHIETMANAVAEGAREA-GATVDIKRVPELVPPEIAKASHYKLDQAAPIATVDDLANYDAIIIGTGTRFGRITSQMANFLDQAGGLWAKGVLHGKVGGAFTSTASQHGGQETTLFSIITNLLHFGMVVVGLNYGYG-GLTTLDEVAGGSPYGATTITGGDGARQPSANELGGARYQGKVIAETAIKLHG 199          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_NITWN (Flavoprotein wrbA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=wrbA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.298e-31
Identity = 80/199 (40.20%), Postives = 106/199 (53.27%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYS YGH+E +A  +  GA    G    + +VPE +PE V            P+   ++LA+ D  V G+ TRFG M++Q  +FLD  GGLW    L GK  G F               + IT L+H GM  V + Y F AG   +++V GG+PYGA T A GDGSR P+E EL  A +QG+ IA    KL G
Sbjct:    3 KVLVLYYSAYGHIEAMANAVADGARQA-GATVDVKRVPELVPEAVAKAKYFKLDQAAPLAKVDDLADYDAIVVGTGTRFGRMSSQMASFLDQAGGLWARGALHGKVGGAFSSSATQHGGQETTLFSIITNLLHFGMTIVGLNYGF-AGQMGVKEVTGGAPYGATTIADGDGSRPPSENELAGARYQGRMIAETAAKLHG 199          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_RHOP2 (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain HaA2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 77/199 (38.69%), Postives = 104/199 (52.26%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYS YGH+E +A  + +GA    G    + +VPE +P +V            P+ T ++LA  D  + G+ TRFG MA+Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y F  G   + ++ GG+PYGA T   GDG+RQP+  EL  A +QGK IA    KL G
Sbjct:    3 KVLVLYYSAYGHIETMANAVAEGAREA-GATVDIKRVPELVPPDVAKASYYKLDQAAPVATIDDLANYDAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALNGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGF-QGQMTLGEITGGAPYGATTLTGGDGARQPSANELAGARYQGKTIAETAIKLHG 199          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: RFS1_YEAST (Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 76/202 (37.62%), Postives = 105/202 (51.98%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP------ETLPEEVLGKMSAPPKS-----DVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDA-TGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXA-LTAITQLVHHGMIFVPIGYTFG-AGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGK 649
            KV I+ YS+   +  LAE  KKG   + G EA+++QVP      E   EE  GK +A            I+T   L E D ++FG PT+FG   A++K+F D+ TGGLW    L GK AG+F               + A++ LVHHG+I+VP+GY      + ++E V G   +GAG  +G DG R P+  EL     QGK
Sbjct:    3 KVAILIYSVDDIIATLAENEKKGIE-IAGGEAEIFQVPDVSYKTEYATEE--GKEAAKVAKTNADFSYKILTRETLVEYDYYLFGIPTKFGNFPAEWKSFWDSNTGGLWAKGSLHGKIAGLFVSGAISGKGDTEMCIMNAMSTLVHHGVIYVPLGYKNAYKELTDVEDVNGSCAWGAGCVSGIDGGRPPSLSELRVHQLQGK 201          
The following BLAST results are available for this feature:
BLAST of FC932266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_OLICO2.983e-3240.00Flavoprotein wrbA OS=Oligotropha carboxidovorans (... [more]
WRBA_RHOP55.089e-3240.20Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_RHOPB3.298e-3139.20Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_NITWN3.298e-3140.20Flavoprotein wrbA OS=Nitrobacter winogradskyi (str... [more]
WRBA_RHOP22.138e-3038.69Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
RFS1_YEAST1.536e-2037.62Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34206F05EF PostHarveN Citrus clementina cDNA clone C34206F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932266 ID=FC932266; Name=FC932266; organism=Citrus clementina; type=EST; length=702bp
GGAATCCATTTTTTCAAACTTTTTTTTTATATATAGAGAGAAAAGTAACA
GAGACTCGTCGAAGAAGACTCCTTAAGAGATGGCAACCAAAGTGTATATT
GTGTACTATTCCATGTATGGACATGTAGAGAAACTGGCAGAAGAGATAAA
GAAAGGAGCTTCATCTGTTGAGGGTGTTGAAGCCAAATTATGGCAGGTCC
CTGAGACACTACCTGAGGAGGTACTTGGTAAGATGAGTGCACCACCAAAG
AGTGATGTACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTT
TGTTTTTGGCTCCCCAACAAGATTTGGAATGATGGCTGCTCAATTTAAAG
CATTTTTAGATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGC
AAACCTGCTGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGA
GACTACAGCGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATAT
TTGTTCCTATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAA
GTGAAAGGTGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGATGGCTC
GAGACAGCCAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAAC
ACATTGCGGGCATTTGCAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAA
TT
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