FC932271

Overview
NameFC932271
Unique NameFC932271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.735e-65
Identity = 128/173 (73.99%), Postives = 146/173 (84.39%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSARE-ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRGR ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS  S+ +TLERYQK +YG P+  +  +E  L  SS+ EYLKLKAR E LQR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK 173          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.112e-63
Identity = 123/172 (71.51%), Postives = 146/172 (84.88%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRGR ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+S + KTLERYQ+C+YG+ E +  ++E    SS QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKET--ESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK 170          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.664e-56
Identity = 114/172 (66.28%), Postives = 136/172 (79.07%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRG+ ELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS + KTLERY+ CNY       SA    ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK 172          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.664e-56
Identity = 114/172 (66.28%), Postives = 136/172 (79.07%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRG+ ELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS + KTLERY+ CNY       SA    ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK 172          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.840e-55
Identity = 119/218 (54.59%), Postives = 157/218 (72.02%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA---DFAGLQLMEGYQ--------VNTLQLNPSAEDCGY 632
            MGRG+ ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS S + +T+++Y+K +Y   +PN SA++  +    Q+YLKLK+R E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++      A    F G    E  Q        +++ Q NP  ++ G+
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQD--KYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGF 216          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.193e-54
Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRG+ ELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS + KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.193e-54
Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRG+ ELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS + KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.545e-53
Identity = 111/172 (64.53%), Postives = 134/172 (77.91%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRGR ELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ I KTLERYQ C Y A + N +  E    S   E  KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNNALSET--QSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHK 169          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 9.451e-52
Identity = 103/172 (59.88%), Postives = 137/172 (79.65%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRG+  L+RIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVAL++FS+ G+LY+F SSS++LKTLERYQ+  Y + +      + ++ ++ QEY+ LKA  E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQ-NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRK 171          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.592e-51
Identity = 107/172 (62.21%), Postives = 129/172 (75.00%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRGR ELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ I KTLE+Y  C Y A   N +       S  QE  +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNK 171          
The following BLAST results are available for this feature:
BLAST of FC932271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MADS8_ORYSJ9.735e-6573.99MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA9.112e-6371.51MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ1.664e-5666.28MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.664e-5666.28MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL3_ARATH1.840e-5554.59Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MADS1_ORYSJ1.193e-5463.95MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI1.193e-5463.95MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS6_ORYSJ6.545e-5364.53MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD34_ORYSJ9.451e-5259.88MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD17_ORYSJ3.592e-5162.21MADS-box transcription factor 17 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34206G02EF PostHarveN Citrus clementina cDNA clone C34206G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932271 ID=FC932271; Name=FC932271; organism=Citrus clementina; type=EST; length=687bp
GAGAGGAGAAGAAAATGGGTAGGGGTAGGTTTGAGTTGAAGAGGATAGAG
AACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATT
GAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCA
TCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGC
ATACTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGA
ACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAAT
ATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAAT
CTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACT
TGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTC
AGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTG
AGCGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGC
CGATTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTC
AATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAACCAGCTCACC
TCAGGGCGATACTTCTTTCACGCCTTGGATGTGAACC
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