FC932351

Overview
NameFC932351
Unique NameFC932351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932351 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 3
Query:  273 IQTLEGHTDRVWSLAWKPTAGVDSVAPVFASCSGDKTVRIWEQSASSRSWNCKGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 656
            ++   GHT  ++ + + P         +FA+   D+TV+IW+   +      KGH++ V SVS++  G +LA+  RD++V +W    G   + ++VL GH + V   Q+ P    L S   D  I++W
Sbjct:  594 LREFTGHTGSIYRVDFSPNG------KIFATAGQDQTVKIWDLDGNLLQ-TLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSG---KTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLW 711          
BLAST of FC932351 vs. ExPASy Swiss-Prot
Match: SPG16_HUMAN (Sperm-associated antigen 16 protein OS=Homo sapiens GN=SPAG16 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 36/123 (29.27%), Postives = 58/123 (47.15%), Query Frame = 3
Query:  288 GHTDRVWSLAWKPTAGVDSVAPVFASCSGDKTVRIWEQSASSRSWNCKGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 656
            GHTD +    + P+          A+ SGD TV++W+          +GH   V S +W++ G  +A+   DK+  IW+V   N   C   L GH   V  +++ P  + L + S D T+ +W
Sbjct:  392 GHTDWLSDCCFHPSGDK------LATSSGDTTVKLWDLCKGDCILTFEGHSRAVWSCTWHSCGNFVASSSLDKTSKIWDV---NSERCRCTLYGHTDSVNSIEFFPFSNTLLTSSADKTLSIW 505          
BLAST of FC932351 vs. ExPASy Swiss-Prot
Match: WDR12_PONAB (Ribosome biogenesis protein WDR12 OS=Pongo abelii GN=WDR12 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 47/162 (29.01%), Postives = 72/162 (44.44%), Query Frame = 3
Query:  261 ELREIQTLEGHTDRVWSLAWKPTAGVDSVAPVFASCSGDKTVRIWEQSASSRSWN----CKGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE-----------------------CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 665
            E + I T+ GHTD V  +AW      DS++ +  S S D+T+ +WE +           C+GH   V S++ + SGT   +   DK + IW  +P +E +                        V  L GH + V  V W    ++  S S+D+TI+VW  E
Sbjct:  129 EGKSIMTIVGHTDVVKDVAWVKK---DSLSCLLLSASMDQTILLWEWNVERNKVKALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPVVTLSGHMEAVSSVLWSDAEEIC-SASWDHTIRVWDVE 286          
BLAST of FC932351 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 38/128 (29.69%), Postives = 61/128 (47.66%), Query Frame = 3
Query:  273 IQTLEGHTDRVWSLAWKPTAGVDSVAPVFASCSGDKTVRIWEQSASSRSWNCKGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 656
            +QT EGH DR+  +A+ P+           + S DKT R+W+ +  +     +GH   V  +++   G L A+CG D    +W++  G     + V QGH + V  V + P    L S   DN  ++W
Sbjct:  332 LQTFEGHLDRLARVAFHPSG------KYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRS---ILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIW 450          
BLAST of FC932351 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 39/127 (30.71%), Postives = 66/127 (51.97%), Query Frame = 3
Query:  276 QTLEGHTDRVWSLAWKPTAGVDSVAPVFASCSGDKTVRIWEQSASSRSWNCKGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 656
            +T +GH   V +LA  PT       P+  + S DKT ++W           +GH++ V  V ++ +GT LA+ G D +V IW+     +  CV+    H Q +  V++H   +V+ S S D+T+++W
Sbjct:  320 KTFKGHLLSVANLALHPTK------PILVTASDDKTWKMWHMPGGDLIMCGEGHKDWVAGVDFHPAGTCLASGGGDSAVKIWDF---EKQRCVTTFTDHKQAIWSVRFHHLGEVVASGSLDHTVRLW 437          
BLAST of FC932351 vs. ExPASy Swiss-Prot
Match: PEX7_HUMAN (Peroxisomal targeting signal 2 receptor OS=Homo sapiens GN=PEX7 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  267 REIQTLEGHTDRVWSLAWKPTAGVDSVAPVFASCSGDKTVRIWEQSASSRSWNCKGHENEVKSVSW-NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDS 677
            + + T  GH   ++S  W P      +   FAS SGD+T+RIW+  A+        H+ E+ S  W   +  LL T   D S+  W++   N  + V  L GH   ++ V++ P    VL SCSYD T++ W     DS
Sbjct:  146 KSLCTFRGHESIIYSTIWSP-----HIPGCFASASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLR--NVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDS 277          
BLAST of FC932351 vs. ExPASy Swiss-Prot
Match: NUDFA_NEUCR (Nuclear distribution protein pac-1a OS=Neurospora crassa GN=pac-1a PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 43/145 (29.66%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  279 TLEGHTDRVWSLAWKPTAGVDSVAPVFASCSGDKTVRIWEQSASSRSWNCKGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 704
            TL+ H D +  +A+ P      V    AS S D+T++IW+          KGH   V  V +      TLLA+C  D ++ +W+  P + ++ +  L GH   V  V++ P + ++L S S D T+++W     D    +CV+T+
Sbjct:  109 TLQSHRDPITCVAFHP------VFSSLASGSEDQTIKIWDWELGELERTIKGHTKAVLDVDYGGPRGNTLLASCSSDLTIKLWD--PLDSYKNIRTLPGHDHSVSAVRFIPGSGNLLVSASRDKTLRIW-----DVSTGYCVKTL 240          
The following BLAST results are available for this feature:
BLAST of FC932351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
Y143_SYNY36.977e-1129.69Uncharacterized WD repeat-containing protein slr01... [more]
SPG16_HUMAN6.977e-1129.27Sperm-associated antigen 16 protein OS=Homo sapien... [more]
WDR12_PONAB9.112e-1129.01Ribosome biogenesis protein WDR12 OS=Pongo abelii ... [more]
PRP4_ARATH9.112e-1129.69U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
PF20_CHLRE9.112e-1130.71Flagellar WD repeat-containing protein Pf20 OS=Chl... [more]
PEX7_HUMAN9.112e-1132.37Peroxisomal targeting signal 2 receptor OS=Homo sa... [more]
NUDFA_NEUCR9.112e-1129.66Nuclear distribution protein pac-1a OS=Neurospora ... [more]

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Properties
Property NameValue
Genbank descriptionC34207F10EF PostHarveN Citrus clementina cDNA clone C34207F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932351 ID=FC932351; Name=FC932351; organism=Citrus clementina; type=EST; length=736bp
GCCGGGGGACGAAACAAACCACAAGCACCCGTAATTACCGCACCCGATTC
GAAAGGTCCGAGCGCGTGCCATTCCCAAGCTTCTGGTTTTAAACTTTATT
CTAGTCCCTCGGCAGCGTTGGCTGCTCACTGTTTGTTGTTACCAATCAAC
CTAAACAGCGAGCTAGTTAGCTACTTTTGATCATCCAAAAGGAACAGTTA
AATCGATCATTAACGTTATTTACAGTTCGTTCAATGGAGTTTCTGGATGA
CGGAAATTATGAGCTGAGAGAGATTCAAACACTCGAAGGCCATACCGACA
GAGTCTGGAGCCTCGCTTGGAAGCCGACCGCCGGCGTCGACAGTGTTGCG
CCGGTCTTTGCTTCCTGTAGTGGTGATAAGACCGTACGAATCTGGGAGCA
GAGCGCCTCCTCTCGCTCTTGGAATTGCAAGGGTCATGAAAATGAAGTAA
AAAGTGTGTCTTGGAATGCATCTGGTACTTTGCTTGCAACATGTGGTCGA
GACAAATCTGTTTGGATTTGGGAAGTAATGCCAGGAAATGAATTTGAGTG
TGTTTCAGTGTTGCAAGGACACGCGCAAGATGTGAAAATGGTTCAATGGC
ATCCAACCATGGATGTCTTATTTTCTTGTAGCTATGATAACACTATTAAG
GTCTGGTGGGCAGAGGATACTGATAGTGATAATTGGCATTGTGTTCAAAC
CATAAGTGAATCTAACATGGTCACTCTTCTACCATT
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