FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 75/169 (44.38%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV-GEFSFHLPDISKTADQ 730
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG+ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LV NK+D+    RAVPT + +A A++ G+ F ETSA  + NV   F   L +I +   Q
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQ 178          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 72/154 (46.75%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            + K+LLIGDS VGK+ LLLR                  K + I +DG+   LQIWDTAG+ERFRTIT+++YRGA G+L+ YDVTD+ ++NN+R W++ I+++A   V+++LV NK D+ E ++ V TS  +  AD  GI F E SA T +NV E
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDL-EDRKLVNTSIAREYADSLGIPFMEASAATGVNVEE 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 2
Query:  233 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQIWDTAG+ERFR++T AYYR A  +LL+YDVT+++SF++I+ W+  I++HA D+V  +L+ NK D    +RAV     + LA +YG+ F ETSAKT LNV
Sbjct:   65 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVD-SAQERAVKREDAEKLAKDYGLPFMETSAKTGLNV 214          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 75/169 (44.38%), Postives = 104/169 (61.54%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE-FSFHLPDISKTADQ 730
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG+ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA +N+  +LV NK+D+    RAVPT + +A A++  + F ETSA  + NV E F   L +I +   Q
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 178          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 72/153 (47.06%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L K+++IGDSG GKS LLLR                  KI+T+++D   IKLQIWDTAG+ERFRTIT+ YYRGA GI+ VYDVT++ SF++I   W+++I+++A+ NV K+L+ NK D+ ES R V   + + +A++  + + E SAKT+ NV
Sbjct:    7 LFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAES-RVVSADEAKHVAEQNNMNYIEASAKTDSNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32
Identity = 75/169 (44.38%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE-FSFHLPDISKTADQ 730
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG+ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LV NK+D+    RAVPT + +A A++  + F ETSA  + NV E F   L +I +   Q
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 178          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32
Identity = 75/169 (44.38%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE-FSFHLPDISKTADQ 730
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG+ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LV NK+D+    RAVPT + +A A++  + F ETSA  + NV E F   L +I +   Q
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 178          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32
Identity = 75/169 (44.38%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE-FSFHLPDISKTADQ 730
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG+ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LV NK+D+    RAVPT + +A A++  + F ETSA  + NV E F   L +I +   Q
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 178          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32
Identity = 75/169 (44.38%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE-FSFHLPDISKTADQ 730
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG+ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LV NK+D+    RAVPT + +A A++  + F ETSA  + NV E F   L +I +   Q
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 178          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32
Identity = 75/169 (44.38%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV-GEFSFHLPDISKTADQ 730
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG+ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LV NK+D+    RAVPT + +A A++ G+ F ETSA    NV   F   L +I +   Q
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQ 178          
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_CANFA1.115e-3244.38Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RABG2_DICDI1.115e-3246.75Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB26_BOVIN1.115e-3246.36Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RB11B_DISOM1.901e-3244.38Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RAB1_THEPA1.901e-3247.06Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RB11B_RAT2.483e-3244.38Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE2.483e-3244.38Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN2.483e-3244.38Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN2.483e-3244.38Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_BOVIN2.483e-3244.38Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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