FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.449e-48
Identity = 101/169 (59.76%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLP-DISKTADQ 730
            L KLLLIGDSGVGK+C L R                  KIRTIELDGKRIKLQIWDTAG+ERFRTITTAYYRGAMGI+LVYD+T+E SF NIRNW+RNIE+HAS +V K+++ NK D ++ KR V   +G+ LA  +GIKF ETSAK N+N+    F L  DI    D+
Sbjct:    8 LFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDAND-KRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDK 175          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.038e-46
Identity = 91/161 (56.52%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPD 709
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAG+ERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI+QHA+++V ++L+ NK DMD  KR VP  KG+ +A E+ I+FFETSAK N+N+ +    LP+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPE 168          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 89/152 (58.55%), Postives = 115/152 (75.66%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAG+ERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+ NK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINI 159          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 89/152 (58.55%), Postives = 115/152 (75.66%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAG+ERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+ NK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINI 159          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 89/152 (58.55%), Postives = 115/152 (75.66%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAG+ERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+ NK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINI 159          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 89/152 (58.55%), Postives = 115/152 (75.66%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAG+ERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+ NK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKVNINI 159          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.771e-46
Identity = 89/152 (58.55%), Postives = 115/152 (75.66%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAG+ERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+ NK DM E KR VP +KG+ +A E+GI+FFETSAK N+N+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDM-EDKRVVPKAKGEQIAREHGIRFFETSAKANINI 159          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 3.946e-46
Identity = 94/152 (61.84%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTDE SFNN++ W+  I+++ASDNVNK+LV NK+D+ E+ RA+P    +A ADE GI F ETSAK   NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 90/154 (58.44%), Postives = 118/154 (76.62%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAG+ERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+ NK DM E+KR V   +   LA E+GI+FFETSAK+++NV E
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDE 160          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.558e-45
Identity = 88/154 (57.14%), Postives = 118/154 (76.62%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLLLIGDSGVGK+CL++R                  KIRT++++GK+IKLQ+WDTAG+ERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+ NK DM E+KR V   +   LA E+GI+FFETSAK+++NV E
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDE 160          
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CHICK1.449e-4859.76Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB10_RAT1.038e-4656.52Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB10_PONAB1.356e-4658.55Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.356e-4658.55Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.356e-4658.55Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA1.356e-4658.55Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_CHICK1.771e-4658.55Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RBD2A_ARATH3.946e-4661.84Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB13_MESAU8.791e-4658.44Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_HUMAN2.558e-4557.14Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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