FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 89/154 (57.79%), Postives = 118/154 (76.62%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAG+ERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+ NK DM E+KR V   + + LA E+ I+FFETSAK+++NV E
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQREQAERLAREHRIRFFETSAKSSVNVDE 160          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45
Identity = 93/152 (61.18%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRT+ELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LV NK+D+  SK+ V  S  +A ADE GI F ETSAK   NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDL-TSKKVVEYSVAKAFADEIGIPFLETSAKNATNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45
Identity = 93/152 (61.18%), Postives = 111/152 (73.03%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LV NK D+ E+ R V    G+ALADE GI F ETSAK   NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKDATNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45
Identity = 87/154 (56.49%), Postives = 118/154 (76.62%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLLLIGDSGVGK+CL++R                  +IRT++++GK+IKLQ+WDTAG+ERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+ NK DM E+KR V   +   LA E+GI+FFETSAK+++NV E
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDE 160          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.442e-45
Identity = 92/152 (60.53%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++ASDNVNK+LV NK+D+  +K  V T   +A ADE GI F ETSAK   NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANK-VVATETAKAFADEMGIPFMETSAKNATNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.442e-45
Identity = 88/154 (57.14%), Postives = 118/154 (76.62%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLLLIGDSGVGK+CL++R                  KIRT++++GKRIKLQ+WDTAG+ERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+ NK DM E+KR V   + + LA E+ I+FFETSAK+++NV E
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDE 160          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.442e-45
Identity = 88/152 (57.89%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAG+ERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+ NK DM E KR V  SKG+ +A E+ I+FFETSAK N+N+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDM-EDKRVVLKSKGEQIAREHAIRFFETSAKANINI 159          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.824e-44
Identity = 91/152 (59.87%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRT+ELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LV NK+D+   K+ V     +A ADE GI F ETSAK   NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDL-TGKKVVDYQAAKAFADEIGIPFLETSAKNATNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.228e-44
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++A +NVNK+LV NK+D+  +KR V T   +  A+  GI+F ETSAK   NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDL-TAKRVVSTDAAKEFAESLGIEFLETSAKNAANV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.228e-44
Identity = 90/152 (59.21%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LV NK+D+  +K+ V  +  +  AD+ GI F ETSAK   NV
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDFTTAKEYADQLGIPFLETSAKNATNV 161          
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_RAT3.341e-4557.79Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
YPTC1_CHLRE5.698e-4561.18GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RIC1_ORYSJ5.698e-4561.18Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB13_BOVIN5.698e-4556.49Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
YPTM2_MAIZE7.442e-4560.53GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB13_MOUSE7.442e-4557.14Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB10_DISOM7.442e-4557.89Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
YPTV1_VOLCA4.824e-4459.87GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPT1_PHYIN8.228e-4459.21Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1A_LYMST8.228e-4459.21Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
back to top