FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.404e-43
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LV NK D+  +K+ V  +  +  AD  GI F ETSAK   NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.404e-43
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LV NK D+  +K+ V  +  +  AD  GI F ETSAK   NV
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 161          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.404e-43
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LV NK D+  +K+ V  +  +  AD  GI F ETSAK   NV
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 161          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.404e-43
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LV NK D+  +K+ V  +  +  AD  GI F ETSAK   NV
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 161          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.404e-43
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LV NK D+  +K+ V  +  +  AD  GI F ETSAK   NV
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 161          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.404e-43
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LV NK D+  +K+ V  +  +  AD  GI F ETSAK   NV
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 161          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.394e-43
Identity = 86/159 (54.09%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHL 703
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAG+ERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LV NK+DM+   R V   +G+ALA E GI F E+SAK + NV E  F L
Sbjct:   20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.084e-43
Identity = 86/159 (54.09%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHL 703
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAG+ERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LV NK+DMD   R V   +G+ALA E G+ F E+SAK + NV E  F L
Sbjct:   20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMD--TRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTL 176          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.966e-43
Identity = 88/154 (57.14%), Postives = 111/154 (72.08%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLLLIGDS VGKSC LLR                  KIRT+E++GK +KLQIWDTAG+ERFRTIT++YYRGA GI++VYD+TD  SFNN++ W+  I+++A+D+V K+LV NK D+ E+ RAV TS  QA A E GI F ETSAK ++NV E
Sbjct:    8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAEN-RAVDTSVAQAYAQEVGIPFLETSAKESINVEE 160          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.188e-42
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDS VGKSCLLLR                  KIRTIE DGK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYD T+  SFNN++ W+  I+++A+++V K+L+ NK DM ESK  V T  G+ALADE GI F ETSAK ++NV
Sbjct:    8 LFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESK-VVSTETGRALADELGIPFLETSAKDSINV 158          
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1_DISOM1.404e-4359.21Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1A_RAT1.404e-4359.21Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG1.404e-4359.21Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE1.404e-4359.21Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.404e-4359.21Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.404e-4359.21Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
SEC4_YEAST2.394e-4354.09Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
SEC4_CANGA4.084e-4354.09Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
YPTM1_MAIZE6.966e-4357.14GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RABD1_ARATH1.188e-4259.21Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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