FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 49/155 (31.61%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L+KL ++GD GVGK+ + ++                  + + + +D +   L I DTAG++    +   + R   G +LVY VT  SSF+ ++ +   I +    D+V  +++ NK+D+D+ +R V   +G+ LA   G+ F E SAKT LNV E
Sbjct:   10 LVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCL-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDD-ERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEE 162          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 48/162 (29.63%), Postives = 79/162 (48.77%), Query Frame = 2
Query:  230 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVENKADMDESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNV 682
            IK + +GD  VGK+C+L+                       + +DG  + L +WDTAG+E +  +    YRGA   LL + +  ++S+ NI + WI  + +H + NV  +LV  K D+ + K+          + TS+G+ L    G + + E S+KT  NV
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPEL-RHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQQNV 166          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            KL+++G  GVGKS L ++                   KI T+  DG   +L I DTAG+E F  +   Y R   G LLV+ + D  SFN + + + + +     D+   +LV NKAD+ E++R V  S+  + +  + + +FE SAK  LNV E
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTV--DGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADL-ENQRQVLRSEASSFSASHHMTYFEASAKLRLNVDE 181          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 47/162 (29.01%), Postives = 79/162 (48.77%), Query Frame = 2
Query:  230 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVENKADMDESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNV 682
            IK + +GD  VGK+C+L+                       + +DG  + L +WDTAG+E +  +    YRGA   LL + +   +S+ N+ + WI  + +H + NV  +LV  K D+ + K+         ++ TS+G+ L    G + + E S+KT  NV
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPEL-RHYAPNVPIVLVGTKLDLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTYIECSSKTQQNV 166          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 49/158 (31.01%), Postives = 79/158 (50.00%), Query Frame = 2
Query:  230 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDG------KRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADM--DESKRAVPTSKGQALADEYGIKFFETSAKTNLN 679
            IK++L+GDS VGK+ ++ R                    +TIE+        KRI ++IWDTAG+ER++++   YYR A   L+V+++ D SS    + W ++++  A      I+V NK D+  +E    V        A+  G+ +   SAKT  N
Sbjct:    5 IKVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTEKRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDLQDRA-QGTQVIIVGNKYDLVCEEHSGEVTIP-----AELQGLPYVAVSAKTGYN 156          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 45/153 (29.41%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  233 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            K++++G  GVGKS L ++                  + + + +D +   L + DTAG+E +  +   Y R   G +LVY +T   SF  +  + + I +    D+   +LV NK D+ E  R V + +G+ LA  +G  F ETSAK  + V +
Sbjct:   11 KIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDL-EGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDD 161          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 43/153 (28.10%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  230 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESK--RAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            +K++L+G + VGK+C++ R                    R + +    + L IWDTAG ER++ +  +YYR A   ++ YD+T+  S+  +  W   + Q+  + +   +V  K D+ +    +AVP  + +  A  Y    FETS++T  NV
Sbjct:    8 LKVVLLGYASVGKTCIVTRYTSGQFGDTHTTIGGAFSSKRVV-VGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEELTQNEPE-IEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRTGENV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  233 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVGEFSFH 700
            KL+++GD GVGKS L ++                   ++  E+D +   L + DTAG+E F  +   Y R   G L+VY VTD++SF ++  + + I      ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV + +FH
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK-TFH 169          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  233 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVGEFSFH 700
            KL+++GD GVGKS L ++                   ++  E+D +   L + DTAG+E F  +   Y R   G L+VY VTD++SF ++  + + I      ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV + +FH
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK-TFH 169          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAS1_DROWI (Ras-like protein 1 OS=Drosophila willistoni GN=Ras85D PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = 2
Query:  233 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHL 703
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAG+E +  +   Y R   G LLV+ V    SF +I  +   I++   ++ V  +LV NK D+      V   + + +A +YGI + ETSAKT + V +  + L
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWN--VQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTL 159          
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASY_DICDI4.404e-1331.61Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RAC13_GOSHI4.404e-1329.63Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RRAS_MOUSE5.751e-1333.77Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RAC9_GOSHI5.751e-1329.01Rac-like GTP-binding protein RAC9 OS=Gossypium hir... [more]
YPT10_YEAST7.511e-1331.01GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RAS3_RHIRA7.511e-1329.41Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAB24_DICDI9.810e-1328.10Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
RASM_RAT1.281e-1233.54Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE1.281e-1233.54Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RAS1_DROWI1.281e-1230.38Ras-like protein 1 OS=Drosophila willistoni GN=Ras... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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