FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 79/161 (49.07%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPD 709
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILV NK DM+E +R VPT KGQ LA++ G  FFE SAK N++V +    L D
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 181          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.348e-37
Identity = 79/162 (48.77%), Postives = 107/162 (66.05%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILV NK DM E +R + T +GQ L ++ G +FFETSAK N+NV +    L DI
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDI 190          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.348e-37
Identity = 79/162 (48.77%), Postives = 107/162 (66.05%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILV NK DM E +R + T +GQ L ++ G +FFETSAK N+NV +    L DI
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDI 190          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 79/152 (51.97%), Postives = 104/152 (68.42%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAG+ERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LV NK D+ + KR V     +  AD   + F ETSA  + NV
Sbjct:    8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 75/152 (49.34%), Postives = 105/152 (69.08%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN++++W   I+ ++ +N   +LV NK DMD S+R V   +G+ LAD+ G++FFETSAK N+NV
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMD-SERVVSMDRGRQLADQLGLEFFETSAKENINV 172          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   IL  NK DM E +R V T +GQ L ++ G +FFETSAK N+NV +    L DI
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDM-EDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDI 190          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   IL  NK DM E +R V T +GQ L ++ G +FFETSAK N+NV +    L DI
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDM-EDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDI 190          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 78/161 (48.45%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPD 709
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILV NK DM+E +R VPT KG+ LA++ G  FFE SAK N++V +    L D
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVD 181          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 78/161 (48.45%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPD 709
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILV NK DM+E +R VPT KG+ LA++ G  FFE SAK N++V +    L D
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVD 181          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 78/161 (48.45%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPD 709
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILV NK DM+E +R VPT KG+ LA++ G  FFE SAK N++V +    L D
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVD 181          
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_HUMAN1.963e-3749.07Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3C_HUMAN3.348e-3748.77Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN3.348e-3748.77Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
YPT1_YEAST4.373e-3751.97GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB3_CAEEL4.373e-3749.34Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3C_RAT5.711e-3748.77Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE5.711e-3748.77Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB3B_MOUSE5.711e-3748.45Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU5.711e-3748.45Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN5.711e-3748.45Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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