FC932374

Overview
NameFC932374
Unique NameFC932374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 57/191 (29.84%), Postives = 95/191 (49.74%), Query Frame = 3
Query:  120 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            ++ GSL  +++LW  +  ++ RT  GH   + S+  HP G   AS S+DS ++++DV     +   +     V  + F P G  LA A   S +VKLWD  A  +I             T+ +S    V  V + P+   +A GS D T+ ++D+ +   +   EG    VRS++++P D   L+S S++T
Sbjct:   78 VVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDS-TVKLWDLIAGKMI-------------TEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNP-DGSCLYSGSENT 253          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR69_XENTR (WD repeat-containing protein 69 OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 57/199 (28.64%), Postives = 92/199 (46.23%), Query Frame = 3
Query:   96 ATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            A   +  L+ TGS+D T KLW     +   T +GH   ++S++ + +G    + S D  V V+++ +   I TL     E+   QF+   + +A A     S KLWD+     +ATL+    E             VL V +   G+ +A  S DGT  V+  +  K L  LEGH   +  + ++    R+L ++SD T
Sbjct:  184 AFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATA-SMDKSCKLWDSLNGKCVATLTGHEDE-------------VLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILTASSDKT 368          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 62/216 (28.70%), Postives = 95/216 (43.98%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 707
            H+E    V + P  +     L T S D T KLW+ D   L+ T  GH   +  VA HPSG    + S D   R++D++T A +   E     V+ + F   G  LA + G  +  ++WD      I          +KP         V SV +SP+G  +A G  D    ++D+   K L+ +  H   V  + Y P +   L +AS D  V+++
Sbjct:  297 HKERATDVVFSPVDDC----LATASADRTAKLWKTDGTLLQ-TFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDG-ALAASCGLDSLARVWDLRTGRSILVFQ----GHIKP---------VFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIW 493          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 53/220 (24.09%), Postives = 96/220 (43.64%), Query Frame = 3
Query:  120 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA--------------------AWNLIATLSIPRPEGLKPTDKSSSK---------KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            + TGS D+T KLW  +  +   T  GH   +V ++ +P   + A+ S+D+  +++D+ +   + TL    +E+  + FD  G  + + G    +V +WD +                    +W+    L+    +     D +S K           +L   +   G+ IA  S DGT  V++ T  K +  LEGH   +  + ++P   R+L  +SD T
Sbjct:  150 IATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRI-ITGSFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCITKLEGHEGEISKISFNPQGNRLLTGSSDKT 368          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: REC14_SCHPO (Meiotic recombination protein rec14 OS=Schizosaccharomyces pombe GN=rec14 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 60/225 (26.67%), Postives = 94/225 (41.78%), Query Frame = 3
Query:   51 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ---LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            ENAH+  ++++  V         L + S D  +K W   D +   +E  +T H LGV  +A      +  S      V V++ +TN    +      PSE W     P G T+A        + +WD              P   K ++  +  KF L + +SP+GR I  G   G + +      +  H L GH  PVRS+ +SP    +L +A D   + +YD
Sbjct:   12 ENAHQADIYSLNVVAGN------LWSASGDSKIKKWSIGDAEHSLVEEIDTPHKLGVHHLATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSV-DGRIAVWDN-------------PSDCKISELDTKGKFGLCIDYSPNGRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSVAFSP-GSTLLAAAGDSKMITIYD 215          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR69_XENLA (WD repeat-containing protein 69 OS=Xenopus laevis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 55/192 (28.65%), Postives = 90/192 (46.88%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            L+ TGS+D T KLW     +   T +GH   ++S++ + +G    + S D  V V+++ +   I TL     E+   QF+   + +A A     S KLWD+     +ATL+    E             VL V +   G+ +A  S DGT  V+  +  K L  LEGH   +  + ++    R++ ++SD T
Sbjct:  191 LIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATA-SMDKSCKLWDSLNGKCVATLTGHDDE-------------VLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRIVTASSDKT 368          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR69_BOVIN (WD repeat-containing protein 69 OS=Bos taurus GN=WDR69 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 57/199 (28.64%), Postives = 91/199 (45.73%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 713
            L+ TGS+D T KLW     +   T TGH   ++S++ + SG    + S D  V V++ DT   + TL    +E+    F+    +L + G    + KLWD      +ATL+    E             +L   +   G+ IA  S DGT  +F     + +  LEGH   +  + ++P   R+L  +SD T   ++DA
Sbjct:  191 LVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFN-WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDE-------------ILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKT-ARIWDA 374          

HSP 2 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 53/198 (26.77%), Postives = 94/198 (47.47%), Query Frame = 3
Query:  123 LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVA-AHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 713
            +TGS D T KLW     +   T  GH   V ++A  +P G   A+ S D   +++ V+T     T     +E+  + F+P+ +TL   G    + KLWD  +   + TL+    E             ++S++++  G RI  GS D T++V++    + ++ L GH   + S V++  D  ++ + S D    ++DA
Sbjct:  108 ITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ-STLVATGSMDTTAKLWDIQSGEEVFTLTGHSAE-------------IISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFN-WDCSLILTGSMDKTCKLWDA 290          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 54/198 (27.27%), Postives = 94/198 (47.47%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            L++ GS   ++++W  +  ++ RT  GH   V S+  HP G   AS SLD+ ++++DV     +   +     V  ++F P G  LA A     SVKLWD  A  ++A L             S  K  V  + + P+   +A GS D T+  +D+ + + +   EG  +PVR++++S     +     D   V+ ++
Sbjct:   77 LIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASA-SDDHSVKLWDLTAGKMMAEL-------------SEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKDSLRVYGWE 260          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 52/178 (29.21%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS 650
            L++ GS   ++++W  +  ++ RT  GH   V S+  HP G   AS SLD+ ++++DV     +   +     V  ++F P G  LA A     SVKLWD  A  ++A L             S  K  V  + + P+   +A GS D T+  +D+ + + +   EG  +PVR++++S
Sbjct:   77 LIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASA-SDDHSVKLWDLTAGKMMAEL-------------SEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFS 240          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 3
Query:   48 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692
            + NAH++S+  + + P        + +GS D ++K+WR D +  E+T  GH LG+   +      +  S S D  V+VFDV +   + TL+   + V+   F+P GT +A +G    ++++W     N I   SIP  E             V SV ++ DG  +A GS DG + ++D T    +  L +    P+  + +SP    +L S  ++T
Sbjct:  102 IPNAHKKSISGIKFSPDGR----YMGSGSADCSIKIWRMDFVY-EKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIA-SGSFDETIRIWCARNGNTI--FSIPGHEDP-----------VSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNT 298          
The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
KTNB1_DANRE5.957e-1529.84Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
WDR69_XENTR1.016e-1428.64WD repeat-containing protein 69 OS=Xenopus tropica... [more]
PRP4_ARATH2.264e-1428.70U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
WDR69_RAT2.956e-1424.09WD repeat-containing protein 69 OS=Rattus norvegic... [more]
REC14_SCHPO2.956e-1426.67Meiotic recombination protein rec14 OS=Schizosacch... [more]
WDR69_XENLA5.043e-1428.65WD repeat-containing protein 69 OS=Xenopus laevis ... [more]
WDR69_BOVIN5.043e-1428.64WD repeat-containing protein 69 OS=Bos taurus GN=W... [more]
KTNB1_XENLA5.043e-1427.27Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_XENTR6.586e-1429.21Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
YZLL_CAEEL8.602e-1428.24Uncharacterized WD repeat-containing protein K04G1... [more]

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Properties
Property NameValue
Genbank descriptionC34207H10EF PostHarveN Citrus clementina cDNA clone C34207H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bp
GAGGGTTGTGTCCACCAAACCAAATGAAATTTGCTGGTCTAAAATCAGTC
GAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGAC
CGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGA
AGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCCAC
TGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGC
CTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAACG
CCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAG
TTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATC
TGTAAAGCTCTGGGACACAGCCGCTTGGAATCTGATTGCCACCCTGTCAA
TTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAG
TTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGTGG
TTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCC
TGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCC
CCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCA
CATGTATGATGCTNGAGGTAAAGTCTG
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