FC932374
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13 Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 3 Query: 39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692 LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+ VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G SV++WD + TL P P V +V ++ DG I S DG ++D + L L + PV + +SP +L + D+T Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13 Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 3 Query: 39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692 LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+ VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G SV++WD + TL P P V +V ++ DG I S DG ++D + L L + PV + +SP +L + D+T Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13 Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 3 Query: 39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692 LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+ VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G SV++WD + TL P P V +V ++ DG I S DG ++D + L L + PV + +SP +L + D+T Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13 Identity = 54/200 (27.00%), Postives = 98/200 (49.00%), Query Frame = 3 Query: 111 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 704 P L+ TGS D TVKLW +T + V++V + + S +D+ ++V+D+ N T+ V + +G+ L ++ +V++WD + P+ +K + + +K +L +WSPDG +IA GS D ++ V+D T + L+ L GH + + + P +P ++ SAS D ++M Sbjct: 164 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IIISASSDKRLYM 353
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13 Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 3 Query: 60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 H + +VT+ + L+ G+ T+KLW ++ ++ RT TGH +SV HP G AS SLD+ ++++D+ I T + V ++F P G + V+GG VK+WD A L+ T+ S + + S+ + P +A GS D T+ +D+ + + VR L ++P VL + + ++ Sbjct: 58 HSSGIDSVTF----DASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWV-VSGGEDNIVKVWDLTAGKLL-------------TEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWE 256
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13 Identity = 56/179 (31.28%), Postives = 89/179 (49.72%), Query Frame = 3 Query: 51 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 587 E+ H + V V + P + P ++ G D TVK+W + +L+ + GH + +V P G + S DS ++D++ ++ TLE + + F P L VA G S+K+WD A + L RPE + PT K+ + LS+AWS DG+ + G D TI V+ V+ Sbjct: 145 EDGHTDWVSCVRFSP-NHSNPIIVSCG-WDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLE-HNDIINALCFSPNRYWLCVAYG--PSIKIWDLACKKTVEEL---RPEVVSPTSKADQPQ-CLSLAWSTDGQTLFAGYSDNTIRVWQVS 314
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13 Identity = 62/233 (26.61%), Postives = 112/233 (48.07%), Query Frame = 3 Query: 15 PNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 P +F+ +K++ + H +SV + + + L TGS D+ +K+W DM +T H LG+ + + ASAS D+ V++FDV + A + T+ + V+ F+P+ + +A A G +V++WD + + P P + S++++ DG +A S DG I V+D L L + PV + +SP + + L SA D+ + ++D Sbjct: 198 PENGEFSLVKTI-SGHTKSVSVIKFSYCGK----YLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASA-GFDETVRVWDFKTGLCVKCI----PAHSDP---------ITSISYNHDGNTMATSSYDGCIRVWDAASGSCLKTLVDTDHAPVTFVCFSP-NGKYLLSAQLDSSLKLWD 410
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13 Identity = 54/200 (27.00%), Postives = 97/200 (48.50%), Query Frame = 3 Query: 111 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 704 P L+ TGS D TVKLW +T + V++V + + S +D+ ++V+D+ N T+ V + +G+ L ++ +V++WD + P+ +K + + +K +L +WSPDG +IA GS D + V+D T + L+ L GH + + + P +P ++ SAS D ++M Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13 Identity = 54/200 (27.00%), Postives = 97/200 (48.50%), Query Frame = 3 Query: 111 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 704 P L+ TGS D TVKLW +T + V++V + + S +D+ ++V+D+ N T+ V + +G+ L ++ +V++WD + P+ +K + + +K +L +WSPDG +IA GS D + V+D T + L+ L GH + + + P +P ++ SAS D ++M Sbjct: 164 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IIISASSDKRLYM 353
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12 Identity = 54/181 (29.83%), Postives = 84/181 (46.41%), Query Frame = 3 Query: 171 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 713 + L +T GH L V ++A HP+ I +AS D +++ + I E V + F P GT LA +GGG ++VK+WD + T + K+ + SV + G +A GS+D T+ ++D+ K L GH V L + P L +AS D V ++DA Sbjct: 316 LSLNKTFKGHLLSVANLALHPTKPILVTASDDKTWKMWHMPGGDLIMCGEGHKDWVAGVDFHPAGTCLA-SGGGDSAVKIWDFEKQRCVTTFT-------------DHKQAIWSVRFHHLGEVVASGSLDHTVRLWDLPAGKCRMALRGHVDSVNDLAWQPFSSS-LATASSDKTVSVWDA 481 The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bpback to top |