FC932374

Overview
NameFC932374
Unique NameFC932374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD      + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD      + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD      + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 54/200 (27.00%), Postives = 98/200 (49.00%), Query Frame = 3
Query:  111 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 704
            P L+ TGS D TVKLW        +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   +K    +  + +K +L  +WSPDG +IA GS D ++ V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  164 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IIISASSDKRLYM 353          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            H   + +VT+    +    L+  G+   T+KLW  ++ ++ RT TGH    +SV  HP G   AS SLD+ ++++D+     I T +     V  ++F P G  + V+GG    VK+WD  A  L+             T+  S +  + S+ + P    +A GS D T+  +D+   + +         VR L ++P    VL    +   +  ++
Sbjct:   58 HSSGIDSVTF----DASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWV-VSGGEDNIVKVWDLTAGKLL-------------TEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWE 256          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 56/179 (31.28%), Postives = 89/179 (49.72%), Query Frame = 3
Query:   51 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 587
            E+ H + V  V + P   + P ++  G  D TVK+W   + +L+  + GH   + +V   P G +  S   DS   ++D++   ++ TLE     +  + F P    L VA G   S+K+WD A    +  L   RPE + PT K+   +  LS+AWS DG+ +  G  D TI V+ V+
Sbjct:  145 EDGHTDWVSCVRFSP-NHSNPIIVSCG-WDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLE-HNDIINALCFSPNRYWLCVAYG--PSIKIWDLACKKTVEEL---RPEVVSPTSKADQPQ-CLSLAWSTDGQTLFAGYSDNTIRVWQVS 314          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 62/233 (26.61%), Postives = 112/233 (48.07%), Query Frame = 3
Query:   15 PNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            P   +F+ +K++ + H +SV  + +    +     L TGS D+ +K+W   DM   +T   H LG+   +   +    ASAS D+ V++FDV + A + T+    + V+   F+P+ + +A A G   +V++WD      +  +    P    P         + S++++ DG  +A  S DG I V+D      L  L +    PV  + +SP + + L SA  D+ + ++D
Sbjct:  198 PENGEFSLVKTI-SGHTKSVSVIKFSYCGK----YLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASA-GFDETVRVWDFKTGLCVKCI----PAHSDP---------ITSISYNHDGNTMATSSYDGCIRVWDAASGSCLKTLVDTDHAPVTFVCFSP-NGKYLLSAQLDSSLKLWD 410          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 54/200 (27.00%), Postives = 97/200 (48.50%), Query Frame = 3
Query:  111 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 704
            P L+ TGS D TVKLW        +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   +K    +  + +K +L  +WSPDG +IA GS D  + V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  165 PQLVCTGSDDGTVKLWDIRKKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 54/200 (27.00%), Postives = 97/200 (48.50%), Query Frame = 3
Query:  111 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 704
            P L+ TGS D TVKLW        +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   +K    +  + +K +L  +WSPDG +IA GS D  + V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  164 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IIISASSDKRLYM 353          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 54/181 (29.83%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  171 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 713
            + L +T  GH L V ++A HP+  I  +AS D   +++ +     I   E     V  + F P GT LA +GGG ++VK+WD      + T +               K+ + SV +   G  +A GS+D T+ ++D+   K    L GH   V  L + P     L +AS D  V ++DA
Sbjct:  316 LSLNKTFKGHLLSVANLALHPTKPILVTASDDKTWKMWHMPGGDLIMCGEGHKDWVAGVDFHPAGTCLA-SGGGDSAVKIWDFEKQRCVTTFT-------------DHKQAIWSVRFHHLGEVVASGSLDHTVRLWDLPAGKCRMALRGHVDSVNDLAWQPFSSS-LATASSDKTVSVWDA 481          
The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
WDR5_MOUSE3.269e-1327.85WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN3.269e-1327.85WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN3.269e-1327.85WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
SNR40_PONAB3.269e-1327.00U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
KTNB1_ARATH3.269e-1325.81Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
GBLP_DROME4.269e-1331.28Guanine nucleotide-binding protein subunit beta-li... [more]
YH92_CAEEL7.282e-1326.61Uncharacterized WD repeat-containing protein ZC302... [more]
SNR40_MOUSE9.511e-1327.00U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
SNR40_HUMAN9.511e-1327.00U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
PF20_CHLRE1.242e-1229.83Flagellar WD repeat-containing protein Pf20 OS=Chl... [more]

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Properties
Property NameValue
Genbank descriptionC34207H10EF PostHarveN Citrus clementina cDNA clone C34207H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bp
GAGGGTTGTGTCCACCAAACCAAATGAAATTTGCTGGTCTAAAATCAGTC
GAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGAC
CGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGA
AGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCCAC
TGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGC
CTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAACG
CCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAG
TTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATC
TGTAAAGCTCTGGGACACAGCCGCTTGGAATCTGATTGCCACCCTGTCAA
TTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAG
TTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGTGG
TTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCC
TGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCC
CCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCA
CATGTATGATGCTNGAGGTAAAGTCTG
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