FC932374

Overview
NameFC932374
Unique NameFC932374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 53/200 (26.50%), Postives = 97/200 (48.50%), Query Frame = 3
Query:  111 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 704
            P L+ TGS D TVKLW        +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   ++    +  + +K +L  +WSPDG +IA GS D  + V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  165 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 54/196 (27.55%), Postives = 93/196 (47.45%), Query Frame = 3
Query:  105 TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            T   L++ GS   ++++W  +  ++ RT  GH   + S+  HP G   AS S D+ ++++D+     +         V  ++F P G  LA A     +VKLWD  A  +++      P    P         V  V + P+   +A GS D TI  +D+ + + +  +EG   PVRS++++P D   L+S   D+
Sbjct:   73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253          

HSP 2 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 53/198 (26.77%), Postives = 89/198 (44.95%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            LL TG  D  V LW  +      + TGH   V SV  +    +  + S    +RV+D++    + TL    + +  + F P G  +A +G    ++KLWD             R +G     +  S+  V  + +SPDG+ +A  + D T+ ++D+T  K +    GH  PV  + + P +  +L S S D  +  +D
Sbjct:   35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVA-SGSQDTNIKLWDI------------RRKGCVFRYRGHSQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWD 217          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 54/196 (27.55%), Postives = 93/196 (47.45%), Query Frame = 3
Query:  105 TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            T   L++ GS   ++++W  +  ++ RT  GH   + S+  HP G   AS S D+ ++++D+     +         V  ++F P G  LA A     +VKLWD  A  +++      P    P         V  V + P+   +A GS D TI  +D+ + + +  +EG   PVRS++++P D   L+S   D+
Sbjct:   73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253          

HSP 2 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 53/198 (26.77%), Postives = 89/198 (44.95%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            LL TG  D  V LW  +      + TGH   V SV  +    +  + S    +RV+D++    + TL    + +  + F P G  +A +G    ++KLWD             R +G     +  S+  V  + +SPDG+ +A  + D T+ ++D+T  K +    GH  PV  + + P +  +L S S D  +  +D
Sbjct:   35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVA-SGSQDTNIKLWDI------------RRKGCVFRYRGHSQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWD 217          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 60/212 (28.30%), Postives = 94/212 (44.34%), Query Frame = 3
Query:   54 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASD 686
            + H ++V AV + P      +LL +GS D TV LW         T  GH  GV  VA +P+G   A+A+ D  ++++D +T A + TL    + V+   FD     L  +G    +++LWD  +   +  +    P    P         V S A+S DG  +   S+DG I ++D      L  L +    PV    ++P    VL +  D
Sbjct:   37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNTLD 231          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 56/208 (26.92%), Postives = 97/208 (46.63%), Query Frame = 3
Query:   90 VPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGL-KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            + A + +  L LTG +D+TV L+  +  Q+ +T  GH   + +V  HP  I A SAS DS +RV+    ++S A ++   + V         T +++   G   +   D + W   A   I   + L K + +  S+  V S+ + PDG     G+ D  + ++D+          GH   VRS+ +S  +   L + S+D  V ++D
Sbjct:  214 ITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPV---------TDISLNASGDYILSASDDSYW---AFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSE-NGYYLATGSEDGEVKLWD 408          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 55/199 (27.64%), Postives = 87/199 (43.72%), Query Frame = 3
Query:   96 ATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            A   +  L+ TGS+D T KLW  +  +   T  GH   ++S+  + +G    + S D    ++DV +   +  L     E+  +QF+   + +A A     S K+WD      +ATL     E             VL V ++  G+ IA  S DGT  VF     + L  LEGH   +  + ++    RVL ++ D T
Sbjct:  184 AFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATA-SLDKSCKVWDAEGGQCLATLLGHNDE-------------VLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKT 368          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 62/219 (28.31%), Postives = 99/219 (45.21%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            H  +V++ ++ P  +     LL+GS D+TV+LW  D      +  GH   V  V+  P G   A+AS D   R++  D    +       ++V  + F P G  +   G    + ++WD +  + +   L    P              V+S+A  PDGR ++ GS DG I+V+D+   K L  + GH    + SL YS  +  VL S   D  V ++D
Sbjct:  524 HSGTVYSTSFSPDNK----YLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYV-FTGSSDKTCRMWDVSTGDSVRLFLGHTAP--------------VISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSK-EGNVLISGGADHTVRVWD 722          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 49/179 (27.37%), Postives = 86/179 (48.04%), Query Frame = 3
Query:   51 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 587
            ++ H +    V + P T+    ++++   D  VK+W   + +L+  + GH   V +V   P G + AS   DS   ++D++    + TL+     +  + F P    L VA G   S+K+WD     ++  L   +PE +  T K+ +    LS+AWS DG+ +  G  D  I V+ V+
Sbjct:  144 DDCHTDWTSCVRFSPNTQN--PIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLYTLDGAGDTINALCFSPNRYWLCVASG--PSIKIWDLEGKVVVDEL---KPEVMGTTSKAPT---CLSLAWSADGQTLFAGYTDKLIRVWQVS 312          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 58/243 (23.87%), Postives = 98/243 (40.33%), Query Frame = 3
Query:    3 GLCPPNQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAXG 719
            GLC    +    L      H  +V A+ + P +    + +   L + + D +VKLW  D  +      GH + V  V  HPSG    +   D   R++D++    I   E     V+ + F   G +LA  GG  A  ++WD      I  L                 K +  + +SP+G  IA GS D T  V+D+ + + ++ +  H   V  + + P+    L + + D    ++   G
Sbjct:  252 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG 480          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  165 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAXGK 722
            +D  LER   GH   + S+   P+G   A+AS D+F+ +++   +A           V  +QF P G  LA A     +V+LW            IP   G K ++  +    V SV +S DG+ +A  S D +I V+ + R +FL+ L  H   VR   +SP D R++ S S+D  + ++D   K
Sbjct:    6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWDTTNK 176          
The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
SNR40_BOVIN2.119e-1226.50U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
KTNB1_MOUSE2.119e-1227.55Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN2.119e-1227.55Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
MUT11_CHLRE3.614e-1228.30Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
PRP19_CAEEL6.165e-1226.92Pre-mRNA-processing factor 19 homolog OS=Caenorhab... [more]
WDR69_DANRE8.051e-1227.64WD repeat-containing protein 69 OS=Danio rerio GN=... [more]
TAF5_YEAST8.051e-1228.31Transcription initiation factor TFIID subunit 5 OS... [more]
GBLP_BIOGL8.051e-1227.37Guanine nucleotide-binding protein subunit beta-2-... [more]
PRP4_BOVIN1.052e-1123.87U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos ... [more]
WD51B_PONAB1.373e-1130.65WD repeat-containing protein 51B OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionC34207H10EF PostHarveN Citrus clementina cDNA clone C34207H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bp
GAGGGTTGTGTCCACCAAACCAAATGAAATTTGCTGGTCTAAAATCAGTC
GAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGAC
CGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGA
AGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCCAC
TGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGC
CTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAACG
CCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAG
TTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATC
TGTAAAGCTCTGGGACACAGCCGCTTGGAATCTGATTGCCACCCTGTCAA
TTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAG
TTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGTGG
TTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCC
TGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCC
CCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCA
CATGTATGATGCTNGAGGTAAAGTCTG
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