FC932374
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12 Identity = 53/200 (26.50%), Postives = 97/200 (48.50%), Query Frame = 3 Query: 111 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 704 P L+ TGS D TVKLW +T + V++V + + S +D+ ++V+D+ N T+ V + +G+ L ++ +V++WD + P+ ++ + + +K +L +WSPDG +IA GS D + V+D T + L+ L GH + + + P +P ++ SAS D ++M Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12 Identity = 54/196 (27.55%), Postives = 93/196 (47.45%), Query Frame = 3 Query: 105 TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692 T L++ GS ++++W + ++ RT GH + S+ HP G AS S D+ ++++D+ + V ++F P G LA A +VKLWD A +++ P P V V + P+ +A GS D TI +D+ + + + +EG PVRS++++P D L+S D+ Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253 HSP 2 Score: 69.3218 bits (168), Expect = 2.343e-11 Identity = 53/198 (26.77%), Postives = 89/198 (44.95%), Query Frame = 3 Query: 117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 LL TG D V LW + + TGH V SV + + + S +RV+D++ + TL + + + F P G +A +G ++KLWD R +G + S+ V + +SPDG+ +A + D T+ ++D+T K + GH PV + + P + +L S S D + +D Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVA-SGSQDTNIKLWDI------------RRKGCVFRYRGHSQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWD 217
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12 Identity = 54/196 (27.55%), Postives = 93/196 (47.45%), Query Frame = 3 Query: 105 TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692 T L++ GS ++++W + ++ RT GH + S+ HP G AS S D+ ++++D+ + V ++F P G LA A +VKLWD A +++ P P V V + P+ +A GS D TI +D+ + + + +EG PVRS++++P D L+S D+ Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253 HSP 2 Score: 69.3218 bits (168), Expect = 2.343e-11 Identity = 53/198 (26.77%), Postives = 89/198 (44.95%), Query Frame = 3 Query: 117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 LL TG D V LW + + TGH V SV + + + S +RV+D++ + TL + + + F P G +A +G ++KLWD R +G + S+ V + +SPDG+ +A + D T+ ++D+T K + GH PV + + P + +L S S D + +D Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVA-SGSQDTNIKLWDI------------RRKGCVFRYRGHSQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWD 217
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12 Identity = 60/212 (28.30%), Postives = 94/212 (44.34%), Query Frame = 3 Query: 54 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASD 686 + H ++V AV + P +LL +GS D TV LW T GH GV VA +P+G A+A+ D ++++D +T A + TL + V+ FD L +G +++LWD + + + P P V S A+S DG + S+DG I ++D L L + PV ++P VL + D Sbjct: 37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNTLD 231
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12 Identity = 56/208 (26.92%), Postives = 97/208 (46.63%), Query Frame = 3 Query: 90 VPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGL-KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 + A + + L LTG +D+TV L+ + Q+ +T GH + +V HP I A SAS DS +RV+ ++S A ++ + V T +++ G + D + W A I + L K + + S+ V S+ + PDG G+ D + ++D+ GH VRS+ +S + L + S+D V ++D Sbjct: 214 ITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPV---------TDISLNASGDYILSASDDSYW---AFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSE-NGYYLATGSEDGEVKLWD 408
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12 Identity = 55/199 (27.64%), Postives = 87/199 (43.72%), Query Frame = 3 Query: 96 ATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692 A + L+ TGS+D T KLW + + T GH ++S+ + +G + S D ++DV + + L E+ +QF+ + +A A S K+WD +ATL E VL V ++ G+ IA S DGT VF + L LEGH + + ++ RVL ++ D T Sbjct: 184 AFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATA-SLDKSCKVWDAEGGQCLATLLGHNDE-------------VLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKT 368
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12 Identity = 62/219 (28.31%), Postives = 99/219 (45.21%), Query Frame = 3 Query: 60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSASDDTHVHMYD 710 H +V++ ++ P + LL+GS D+TV+LW D + GH V V+ P G A+AS D R++ D + ++V + F P G + G + ++WD + + + L P V+S+A PDGR ++ GS DG I+V+D+ K L + GH + SL YS + VL S D V ++D Sbjct: 524 HSGTVYSTSFSPDNK----YLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYV-FTGSSDKTCRMWDVSTGDSVRLFLGHTAP--------------VISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSK-EGNVLISGGADHTVRVWD 722
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12 Identity = 49/179 (27.37%), Postives = 86/179 (48.04%), Query Frame = 3 Query: 51 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 587 ++ H + V + P T+ ++++ D VK+W + +L+ + GH V +V P G + AS DS ++D++ + TL+ + + F P L VA G S+K+WD ++ L +PE + T K+ + LS+AWS DG+ + G D I V+ V+ Sbjct: 144 DDCHTDWTSCVRFSPNTQN--PIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLYTLDGAGDTINALCFSPNRYWLCVASG--PSIKIWDLEGKVVVDEL---KPEVMGTTSKAPT---CLSLAWSADGQTLFAGYTDKLIRVWQVS 312
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11 Identity = 58/243 (23.87%), Postives = 98/243 (40.33%), Query Frame = 3 Query: 3 GLCPPNQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAXG 719 GLC + L H +V A+ + P + + + L + + D +VKLW D + GH + V V HPSG + D R++D++ I E V+ + F G +LA GG A ++WD I L K + + +SP+G IA GS D T V+D+ + + ++ + H V + + P+ L + + D ++ G Sbjct: 252 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG 480
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11 Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = 3 Query: 165 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAXGK 722 +D LER GH + S+ P+G A+AS D+F+ +++ +A V +QF P G LA A +V+LW IP G K ++ + V SV +S DG+ +A S D +I V+ + R +FL+ L H VR +SP D R++ S S+D + ++D K Sbjct: 6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWDTTNK 176 The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bpback to top |