FC932374

Overview
NameFC932374
Unique NameFC932374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            HE+SV  V+  P        + T S D T+K+W     +LE T  GH  G+  V         ASAS D  +R++D +   S+  L+   + V  + F+P G TL V+G    +V++W+      +  L    P   +P         ++SV+ S DG   A  S DG   ++DV   + L  L E   +P+ +L ++  + + L  ++ ++ + ++D
Sbjct:   53 HEKSVTCVSVSP----NKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLG-TLLVSGSWDETVRIWNLQDGTCLRML----PAHSEP---------IISVSISADGTLCATASYDGMARIWDVLSGQCLKTLVEPINVPLSNLQFTE-NRKYLLVSNLNSQIRLWD 251          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 61/211 (28.91%), Postives = 101/211 (47.87%), Query Frame = 3
Query:   39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL--GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSE---VWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 656
            +++  + HE+ ++++ +     T    + +GS D TV+LW   D++  +  +   +  GV +VA  P     A+ SLD  VRV+D+    +   LE P      V+ + F P G  L V+G    ++K+W+ +A   I + S P   G         + FVLSVA +PD + +  GS D  +  +D         L+GH   V S+  SPV
Sbjct:  378 IRNTFHGHEQDIYSLDFSRDGRT----IASGSGDRTVRLW---DIETGQNTSVLSIEDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLA-ERLEGPDGHKDSVYSVAFSPDGRNL-VSGSLDKTIKMWELSAPRGIPS-SAPPKGGRCIKTFEGHRDFVLSVALTPDSQWVLSGSKDRGVQFWDPRTGHTQLMLQGHKNSVISVAPSPV 578          

HSP 2 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  204 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            L + SV   P G   A+ + D  +RV+D+ +     T      +++ + F   G T+A +G G  +V+LWD       + LSI              +  V +VA SPD + +A GS+D ++ V+D+    A+ L   +GH   V S+ +SP D R L S S D  + M++
Sbjct:  345 LYIRSVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIA-SGSGDRTVRLWDIETGQNTSVLSI--------------EDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSP-DGRNLVSGSLDKTIKMWE 499          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 59/233 (25.32%), Postives = 103/233 (44.21%), Query Frame = 3
Query:   12 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   A++ I T  +      K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYW---AFSDIQTGRVL----TKVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 59/233 (25.32%), Postives = 103/233 (44.21%), Query Frame = 3
Query:   12 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   A++ I T  +      K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYW---AFSDIQTGRVL----TKVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: CIO1B_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS=Salmo salar GN=ciao1b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 69/252 (27.38%), Postives = 102/252 (40.48%), Query Frame = 3
Query:   45 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS--------VAAHPSGIIAASASLDSFVRVF--DVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW-----------DTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF------DVTRAKF---LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            +V   HE  V  V W P+      LL T S D++V +W  D+      N   C+ VV+        V  HP+  + AS S D+ V V+  + D     ATLE   S VW + FDP G  LA +     +VK+W             AAW  + TLS                + V  +AW P    +A    D  + VF      D  +  F    H  + H   V  + + P +  +L S SD+  + +++
Sbjct:   99 TVLEGHENEVKCVAWAPSGN----LLATCSRDKSVWIWEVDE-----ENEYECVSVVNSHTQDVKHVVWHPTQELLASCSYDNNVCVYKEEDDDWECRATLEGHTSTVWGLTFDPSGQRLA-SCSDDCTVKIWKECQPEGGQEGTDAAWKCVCTLS------------GFHGRTVYDIAWCPLTGALATACGDDGVRVFKEDETADPDQPAFSLSAHVPKAHTQDVNCIAWHPKEAGLLVSCSDNGEIAVWN 328          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 53/203 (26.11%), Postives = 95/203 (46.80%), Query Frame = 3
Query:  120 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV--YSPVDPRVLFSASDDTHVHMYDAXGK 722
            L++ S D+T+K+W     +  +T  GH   V     +P   +  S S D  V++++V T   + TL A    +  + F+  G +L V+G      ++WD A+   + TL+    EG  P         V  V +SP+G+ I   ++D T+ ++D +R + L    GH      L   +S    + + S S+D  V++++   K
Sbjct:   96 LVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNG-SLIVSGSYDGLCRIWDAASGQCLRTLA---DEGNPP---------VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTK 285          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 57/211 (27.01%), Postives = 90/211 (42.65%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            H+++V  V + P+      LL +GS D+TV++W P+          H   V SV     G    +AS D  V+V+       + +L    + V   +F P G  L V+     +VKLWD  +   + +                   FV  V + P G  IA   MD T+ V+DV   + L H + H   V +L + P    ++ ++SD T
Sbjct:   60 HKDAVTCVNFSPSGH----LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGR-LIVSASDDKTVKLWDKTSRECVHSYC-------------EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASSDST 252          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 59/233 (25.32%), Postives = 103/233 (44.21%), Query Frame = 3
Query:   12 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   A++ I T  +      K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYW---AFSDIQTGRVL----TKVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 59/233 (25.32%), Postives = 103/233 (44.21%), Query Frame = 3
Query:   12 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   A++ I T  +      K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYW---AFSDIQTGRVL----TKVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  111 PALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 578
            P  L++GS D T+ LW P + +   T  TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD  A  L   L     E             V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSAD-SRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADE-------------VYAVDWSPDGQRVASGGKDKCLRIW 483          
The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
SWD3_SCHPO3.059e-1127.06Set1 complex component swd3 OS=Schizosaccharomyces... [more]
RCO1_NEUCR3.059e-1128.91Transcriptional repressor rco-1 OS=Neurospora cras... [more]
PRP19_RAT3.059e-1125.32Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]
PRP19_MOUSE3.059e-1125.32Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]
CIO1B_SALSA3.059e-1127.38Probable cytosolic iron-sulfur protein assembly pr... [more]
WDR5B_MOUSE3.996e-1126.11WD repeat-containing protein 5B OS=Mus musculus GN... [more]
WD51A_BOVIN3.996e-1127.01WD repeat-containing protein 51A OS=Bos taurus GN=... [more]
PRP19_HUMAN3.996e-1125.32Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]
PRP19_BOVIN3.996e-1125.32Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
NLE1_PONAB3.996e-1130.57Notchless protein homolog 1 OS=Pongo abelii GN=NLE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207H10EF PostHarveN Citrus clementina cDNA clone C34207H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bp
GAGGGTTGTGTCCACCAAACCAAATGAAATTTGCTGGTCTAAAATCAGTC
GAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGAC
CGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGA
AGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCCAC
TGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGC
CTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAACG
CCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAG
TTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATC
TGTAAAGCTCTGGGACACAGCCGCTTGGAATCTGATTGCCACCCTGTCAA
TTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAG
TTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGTGG
TTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCC
TGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCC
CCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCA
CATGTATGATGCTNGAGGTAAAGTCTG
back to top