FC932374
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 3 Query: 60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 HE+SV V+ P + T S D T+K+W +LE T GH G+ V ASAS D +R++D + S+ L+ + V + F+P G TL V+G +V++W+ + L P +P ++SV+ S DG A S DG ++DV + L L E +P+ +L ++ + + L ++ ++ + ++D Sbjct: 53 HEKSVTCVSVSP----NKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLG-TLLVSGSWDETVRIWNLQDGTCLRML----PAHSEP---------IISVSISADGTLCATASYDGMARIWDVLSGQCLKTLVEPINVPLSNLQFTE-NRKYLLVSNLNSQIRLWD 251
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 61/211 (28.91%), Postives = 101/211 (47.87%), Query Frame = 3 Query: 39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL--GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSE---VWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 656 +++ + HE+ ++++ + T + +GS D TV+LW D++ + + + GV +VA P A+ SLD VRV+D+ + LE P V+ + F P G L V+G ++K+W+ +A I + S P G + FVLSVA +PD + + GS D + +D L+GH V S+ SPV Sbjct: 378 IRNTFHGHEQDIYSLDFSRDGRT----IASGSGDRTVRLW---DIETGQNTSVLSIEDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLA-ERLEGPDGHKDSVYSVAFSPDGRNL-VSGSLDKTIKMWELSAPRGIPS-SAPPKGGRCIKTFEGHRDFVLSVALTPDSQWVLSGSKDRGVQFWDPRTGHTQLMLQGHKNSVISVAPSPV 578 HSP 2 Score: 67.781 bits (164), Expect = 6.816e-11 Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 3 Query: 204 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 L + SV P G A+ + D +RV+D+ + T +++ + F G T+A +G G +V+LWD + LSI + V +VA SPD + +A GS+D ++ V+D+ A+ L +GH V S+ +SP D R L S S D + M++ Sbjct: 345 LYIRSVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIA-SGSGDRTVRLWDIETGQNTSVLSI--------------EDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSP-DGRNLVSGSLDKTIKMWE 499
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 59/233 (25.32%), Postives = 103/233 (44.21%), Query Frame = 3 Query: 12 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 P K+ + S H S+ + + + +LTG D+ V ++ Q+ T GH V SV HPS + SAS D+ +R++ V + + + A S V + G L S+ + W A++ I T + K TD++S + + PDG G+MD I ++D+ + + GH P+ S+ +S + L +A+DD+ V ++D Sbjct: 201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYW---AFSDIQTGRVL----TKVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 59/233 (25.32%), Postives = 103/233 (44.21%), Query Frame = 3 Query: 12 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 P K+ + S H S+ + + + +LTG D+ V ++ Q+ T GH V SV HPS + SAS D+ +R++ V + + + A S V + G L S+ + W A++ I T + K TD++S + + PDG G+MD I ++D+ + + GH P+ S+ +S + L +A+DD+ V ++D Sbjct: 201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYW---AFSDIQTGRVL----TKVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: CIO1B_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS=Salmo salar GN=ciao1b PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 69/252 (27.38%), Postives = 102/252 (40.48%), Query Frame = 3 Query: 45 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS--------VAAHPSGIIAASASLDSFVRVF--DVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW-----------DTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF------DVTRAKF---LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 +V HE V V W P+ LL T S D++V +W D+ N C+ VV+ V HP+ + AS S D+ V V+ + D ATLE S VW + FDP G LA + +VK+W AAW + TLS + V +AW P +A D + VF D + F H + H V + + P + +L S SD+ + +++ Sbjct: 99 TVLEGHENEVKCVAWAPSGN----LLATCSRDKSVWIWEVDE-----ENEYECVSVVNSHTQDVKHVVWHPTQELLASCSYDNNVCVYKEEDDDWECRATLEGHTSTVWGLTFDPSGQRLA-SCSDDCTVKIWKECQPEGGQEGTDAAWKCVCTLS------------GFHGRTVYDIAWCPLTGALATACGDDGVRVFKEDETADPDQPAFSLSAHVPKAHTQDVNCIAWHPKEAGLLVSCSDNGEIAVWN 328
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 53/203 (26.11%), Postives = 95/203 (46.80%), Query Frame = 3 Query: 120 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV--YSPVDPRVLFSASDDTHVHMYDAXGK 722 L++ S D+T+K+W + +T GH V +P + S S D V++++V T + TL A + + F+ G +L V+G ++WD A+ + TL+ EG P V V +SP+G+ I ++D T+ ++D +R + L GH L +S + + S S+D V++++ K Sbjct: 96 LVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNG-SLIVSGSYDGLCRIWDAASGQCLRTLA---DEGNPP---------VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTK 285
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 57/211 (27.01%), Postives = 90/211 (42.65%), Query Frame = 3 Query: 60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692 H+++V V + P+ LL +GS D+TV++W P+ H V SV G +AS D V+V+ + +L + V +F P G L V+ +VKLWD + + + FV V + P G IA MD T+ V+DV + L H + H V +L + P ++ ++SD T Sbjct: 60 HKDAVTCVNFSPSGH----LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGR-LIVSASDDKTVKLWDKTSRECVHSYC-------------EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASSDST 252
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 59/233 (25.32%), Postives = 103/233 (44.21%), Query Frame = 3 Query: 12 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 P K+ + S H S+ + + + +LTG D+ V ++ Q+ T GH V SV HPS + SAS D+ +R++ V + + + A S V + G L S+ + W A++ I T + K TD++S + + PDG G+MD I ++D+ + + GH P+ S+ +S + L +A+DD+ V ++D Sbjct: 201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYW---AFSDIQTGRVL----TKVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 59/233 (25.32%), Postives = 103/233 (44.21%), Query Frame = 3 Query: 12 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 P K+ + S H S+ + + + +LTG D+ V ++ Q+ T GH V SV HPS + SAS D+ +R++ V + + + A S V + G L S+ + W A++ I T + K TD++S + + PDG G+MD I ++D+ + + GH P+ S+ +S + L +A+DD+ V ++D Sbjct: 201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYW---AFSDIQTGRVL----TKVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 3 Query: 111 PALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 578 P L++GS D T+ LW P + + T TGH + V P I ASAS D ++++D T +A+L + V+Q+ + + L V+G +++K+WD A L L E V +V WSPDG+R+A G D + ++ Sbjct: 341 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSAD-SRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADE-------------VYAVDWSPDGQRVASGGKDKCLRIW 483 The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bpback to top |