FC932374

Overview
NameFC932374
Unique NameFC932374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: NLE1_HUMAN (Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  111 PALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 578
            P  L++GS D T+ LW P + +   T  TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD  A  L   L     E             V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSAD-SRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADE-------------VYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 50/179 (27.93%), Postives = 85/179 (47.49%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP 653
            L++ GS   ++++W  +  ++ RT  GH   + S+  HP G   AS SLD+ ++++DV     I   ++    V  ++F P G  LA A     +VKLWD  A  ++           + T  S     V  V + P    +A GS D TI  +D+ +   +  +E    PVR ++++P
Sbjct:   77 LIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKVM----------FEFTGHSGP---VNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNP 241          

HSP 2 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 51/198 (25.76%), Postives = 89/198 (44.95%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            LL TG  D  V +W  +      + TGH   + S+       +  + S    +RV+D++    + TL    + +  + F P G+ +A +G     +KLWD             R +G     KS ++  V  + +SPDG+ +A  + D T+ ++D+T  K +    GH  PV  + + P +  +L S S D  +  +D
Sbjct:   35 LLATGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVA-SGSLDTDIKLWDV------------RRKGCIFKYKSHTQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSE-YLLASGSSDRTIRFWD 217          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 584
            H E V  V + P T T P ++++G  D+ VK+W   + +L+    GH   V +V   P G + AS   D    ++D+     + +L+A    +  + F P    L  A    +S+K+WD  + +++  L   RPE    T K +   + +S+AWS DG  +  G  DG I V+ V
Sbjct:  149 HTEWVSCVRFSPMT-TNP-IIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDA-GDVIHCLCFSPNRYWLCAA--TQSSIKIWDLESKSIVDDL---RPE-FNITSKKAQVPYCVSLAWSADGSTLYSGYTDGQIRVWAV 314          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 52/183 (28.42%), Postives = 86/183 (46.99%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 590
            H + V  V + P   T    +++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS   D  V ++D+     + +LEA  S +  + F P    L  A      +K+WD  + +++  L +      +  D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct:  149 HRDWVSCVRFSP--NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAA--TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 53/203 (26.11%), Postives = 94/203 (46.31%), Query Frame = 3
Query:  120 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV--YSPVDPRVLFSASDDTHVHMYDAXGK 722
            L++ S D+T+KLW     +  +T  GH   V     +P   +  S S D  V++++V T   + TL A    +  + F   G +L V+G      ++WD A+   + TL+    EG  P         V  V +SP+G+ I   ++D T+ ++D +R + L    GH      +   +S    + + S S+D  V++++   K
Sbjct:   96 LVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNG-SLIVSGSYDGLCRIWDAASGQCLRTLA---DEGNPP---------VSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLKTYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIWNLQTK 285          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 58/220 (26.36%), Postives = 89/220 (40.45%), Query Frame = 3
Query:  120 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIP---------RPEG-----------LKPTDKSSSK---------KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            L +GS+D T+ +W           TGH   V  V   PSG + AS S D  VR++  +         A  + V  + F   G +L V      +VK+W T     + +L+            P+G           +K  DK+S +          FV  V + P G  IA   MD T+ V+D    + L H + H   V +L + P    ++ ++SD T
Sbjct:   34 LASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSL-VTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLITASSDST 252          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 57/211 (27.01%), Postives = 90/211 (42.65%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692
            H+++V  V + P+      LL +GS D+TV++W P+          H   V SV     G    +AS D  V+V+       + +L    + V   +F P G  L V+     +VKLWD ++   + +                   FV  V + P G  IA   MD T+ V+DV   + L H + H   V  L + P    ++ ++SD T
Sbjct:   60 HKDAVTCVNFSPSGH----LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGR-LIVSASDDKTVKLWDKSSRECVHSYC-------------EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDST 252          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD-VDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 659
            LL + S D TVKLW  +   +ERT  GH   V+ V   P G + A+ S D  ++++D  +   ++ TL      V  ++F P G TL V+     ++++W  ++   I T              S   ++V     S DGR +   S D T  ++D +  +    L GH   V   V++PV+
Sbjct:  119 LLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGETL-VSASRDKTIRVWQVSSGYCIKTF-------------SGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVN 286          

HSP 2 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 55/176 (31.25%), Postives = 79/176 (44.89%), Query Frame = 3
Query:  186 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA-AWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            T   H   V  +A HP+  + ASAS D+ V+++D +      TL+     V  + FDP+G  +A       ++KLWDTA  +  + TL                   V SV + PDG  +   S D TI V+ V+    +    GH   VR  V S  D R L SAS+D    ++D
Sbjct:  100 TLASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATC-SSDLTLKLWDTANQYTNVKTL-------------HGHDHSVSSVRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSE-DGRWLVSASNDQTSRIWD 260          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 53/198 (26.77%), Postives = 89/198 (44.95%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710
            +++TG  D+ V LW         + +GH   V SV  + S  +  + S    ++++D++    + TL    + +  M F P G  +A +G    +VKLWD             R +G   T K  S + V  + +SPDG+ +   S D TI ++D+T  K     + H   V  + + P +  +L S S D  V  +D
Sbjct:   31 VMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVDSVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVA-SGSTDTNVKLWDV------------RRKGCIYTYKGHSDQ-VNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHP-NEFLLASGSSDRTVQFWD 213          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: CIAO1_SCHJA (Probable cytosolic iron-sulfur protein assembly protein OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 57/198 (28.79%), Postives = 84/198 (42.42%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF--DVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWD-------TAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG 617
            H   V  V W P+      L+ T   D++V LW  DD   +Q       H   V SVA HP G +  S S D+ + V+  ++D     A L    S VW+ +F P G  LA +      VKLW        +++W  IATLS                + +  + WSPD + +A    D  + ++ +  A  L H+ G
Sbjct:  107 HTSEVKCVAWCPSGH----LIATCGRDKSVWLWEFDDEEDVQCVSVLQPHSQDVKSVAWHPHGEVLVSTSYDNKINVYREELDDWTVFAQLSGHDSTVWKAEFSPSGDILA-SCSDDLCVKLWSWEGVCGKSSSWMCIATLS------------GYHTRTIFDLNWSPDSQLLASCGSDNRLCIYKMP-ANGLTHIGG 286          
The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
NLE1_HUMAN3.996e-1130.57Notchless protein homolog 1 OS=Homo sapiens GN=NLE... [more]
KTNB1_CHICK3.996e-1127.93Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
GBLP_CHLRE3.996e-1129.71Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH3.996e-1128.42Guanine nucleotide-binding protein subunit beta-li... [more]
WDR5B_RAT5.219e-1126.11WD repeat-containing protein 5B OS=Rattus norvegic... [more]
WD51A_MOUSE5.219e-1126.36WD repeat-containing protein 51A OS=Mus musculus G... [more]
WD51A_HUMAN5.219e-1127.01WD repeat-containing protein 51A OS=Homo sapiens G... [more]
NUDF_CRYNE5.219e-1128.02Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
KTNB1_STRPU5.219e-1126.77Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
CIAO1_SCHJA5.219e-1128.79Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionC34207H10EF PostHarveN Citrus clementina cDNA clone C34207H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bp
GAGGGTTGTGTCCACCAAACCAAATGAAATTTGCTGGTCTAAAATCAGTC
GAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGAC
CGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGA
AGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCCAC
TGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGC
CTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAACG
CCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAG
TTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATC
TGTAAAGCTCTGGGACACAGCCGCTTGGAATCTGATTGCCACCCTGTCAA
TTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAG
TTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGTGG
TTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCC
TGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCC
CCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCA
CATGTATGATGCTNGAGGTAAAGTCTG
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