FC932374
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11 Identity = 54/175 (30.86%), Postives = 72/175 (41.14%), Query Frame = 3 Query: 60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 584 H VW V P + +GS D T +LW D R GH V V HP+ A+ S D VR++ S+ V + F P G LA A G +KLWD A+ L L TD + S+A+SPD IA SMD ++ V+D+ Sbjct: 383 HAYPVWDVDISPFS----LYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASA-GEDQRLKLWDLASGTLFKELR-------GHTDS------ITSLAFSPDSGLIASASMDNSVRVWDI 539
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11 Identity = 50/184 (27.17%), Postives = 91/184 (49.46%), Query Frame = 3 Query: 54 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIP-RPEGLKPTDKSSSKK----FVLSVAWSPDGRRIACGSMDGTISVFDVTR 590 ++H + V V + P +P ++ +GS D TVK+W + +L T GH V + A P G + AS D + ++D+ + +LE+ S + + F P L A +S+K+WD + +++ L + + E ++ ++S K + S++WS DG + G DG I V+ + R Sbjct: 147 DSHSDWVSCVRFSP-NNLQPTIV-SGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLES-GSIIHSLCFSPNRYWLCAA--TESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKVIYCTSLSWSADGSTLFSGYTDGLIRVWGIDR 325
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11 Identity = 51/198 (25.76%), Postives = 90/198 (45.45%), Query Frame = 3 Query: 123 LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSE-VWQMQFDPKGTTLA-VAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 710 L+ S D+T++LW + + GH V+SV+ P S S D ++++++ N + S+ V ++F P L V+ G +VK+WD ++L T +V +V SPDG A G DGT+ ++D+ + L+ LE + +LV+SP R A+ + + ++D Sbjct: 79 LSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGNCKYTITDGGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFSL-------------RTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAK-ANINALVFSP--NRYWLCAATGSSIRIFD 260
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11 Identity = 52/183 (28.42%), Postives = 86/183 (46.99%), Query Frame = 3 Query: 60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 590 H + V V + P T +++ S D+TVK+W + +L T GH V +VA P G + AS D V ++D+ + +LEA S + + F P L A +K+WD + ++ L + + +D S ++K+ V+ S+ WS DG + G DG I V+ + R Sbjct: 149 HRDWVSCVRFSP--NTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFTPNRYWLCAA--TEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PRP46_SCHPO (Pre-mRNA-splicing factor prp46 OS=Schizosaccharomyces pombe GN=prp5 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11 Identity = 59/207 (28.50%), Postives = 82/207 (39.61%), Query Frame = 3 Query: 87 WVPATETRPA--LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVH 701 WV + P TG+ D T+K+W L+ T TGH V +A P S D V+ +D++TN I S V+ ++ P L V G A ++WD + L S K V S+A ++ GSMD TI ++D+ K L L H VR+L P D S S D H Sbjct: 165 WVRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVL-VTAGRDAVARVWDMRTRQNVHVL-------------SGHKSTVASLAVQEFDPQVVTGSMDSTIRLWDLAAGKTLTTLTHHKKTVRALSLHP-DEFTFASGSSDNIKH 356
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PHIP_MOUSE (PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11 Identity = 62/219 (28.31%), Postives = 97/219 (44.29%), Query Frame = 3 Query: 60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-----KGTTLAVAGGGSASVKLWDTAAWNLIATLSI-PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV--FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692 H SV+ VT+ + + TGS D VK+W DD +L T GH + +A + + A+ S D +RV+ + T A +A L+ + + +QF P K + G+ LWD TL I PRP K T++ ++ ++S G +A GS D I V F + + + LE H V S+ +S R + + D T Sbjct: 182 HLSSVYCVTF----DRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDA------GTLKINPRP--TKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGT 388
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: PHIP_HUMAN (PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11 Identity = 62/219 (28.31%), Postives = 97/219 (44.29%), Query Frame = 3 Query: 60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-----KGTTLAVAGGGSASVKLWDTAAWNLIATLSI-PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV--FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 692 H SV+ VT+ + + TGS D VK+W DD +L T GH + +A + + A+ S D +RV+ + T A +A L+ + + +QF P K + G+ LWD TL I PRP K T++ ++ ++S G +A GS D I V F + + + LE H V S+ +S R + + D T Sbjct: 182 HLSSVYCVTF----DRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDA------GTLKINPRP--AKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGT 388
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11 Identity = 51/203 (25.12%), Postives = 89/203 (43.84%), Query Frame = 3 Query: 42 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS 650 K + H + +V + P+ +L+++ S D T+K+W + + ERT GH V + +G + AS S D ++++D T + TL V ++F P G L ++ ++K+W+ A I TL + +V + S DG IA S D TI +++ + + L H V L +S Sbjct: 99 KHILTGHRNCINSVKFHPSF----SLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQTYDCVKTLHGHDHNVSCVRFTPSGDQL-ISSSRDKTIKVWEAATGYCIKTL-------------VGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFS 283
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11 Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 3 Query: 54 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIP-RPEGLKPTDKSSSKK----FVLSVAWSPDGRRIACGSMDGTISVFDVTR 590 ++H + V V + P +P ++ +GS D TVK+W + +L T GH V + A P G + AS D + ++D+ + +LE+ S + + F P L A +S+K+WD + ++ L + + E + ++S K + S+ WS DG + G DG I V+ + R Sbjct: 147 DSHSDWVSCVRFSP-NNLQPTIV-SGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLES-GSIIHSLCFSPNRYWLCAA--TESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKVIYCTSLGWSADGSTLFSGYTDGLIRVWGIGR 325
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: CIO1A_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-A OS=Salmo salar GN=ciao1a PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11 Identity = 66/249 (26.51%), Postives = 99/249 (39.76%), Query Frame = 3 Query: 45 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWR---PDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF--DVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW--------DTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF------DVTRAKF---LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAXGKV 725 +V HE V V W P+ L T S D++V +W D+ + H V V HP+ + AS S D+ V V+ + D ATLE S VW + FDP G LA + +VK+W AW + TLS + V +AW P +A D + VF D + F H + H V + + P + +L S SD+ + +++ +V Sbjct: 99 TVLEGHENEVKCVAWAPSGNQ----LATCSRDKSVWIWEVDEEDEYECVSVVNSHTQDVKHVVWHPTQELLASCSYDNNVCVYKEEDDDWECRATLEGHTSTVWGLTFDPSGQRLA-SCSDDRTVKIWKECQPGGGQDTAWKCVCTLS------------GFHGRTVYDIAWCPLTGALATACGDDGVRVFKEDETADPDQPVFSLSAHVPKAHSQDVNCIAWHPKEAGLLVSCSDNGEIAVWNYQSEV 330 The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bpback to top |