FC932376

Overview
NameFC932376
Unique NameFC932376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.030e-30
Identity = 70/105 (66.67%), Postives = 79/105 (75.24%), Query Frame = 2
Query:  140 GQET--DKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            G+ET  D+N                RGNGTSMISLI+PP+DQ+SRV+KML DEFGTASNIKSRVNR SVLGAITS Q RLKL  KVPPNGLV+Y GTI T++GKE
Sbjct:    3 GEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKE 107          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.487e-29
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            +  E +KN                RGNGTSMISLI+PP+DQ+SR  KML +E+GTASNIKSRVNRQSVL AITS QQRLKL NKVPPNGLV+Y G I T +GKE
Sbjct:    5 NANEAEKNIEIWKVKKLIKRLEAARGNGTSMISLIIPPKDQISRAAKMLAEEYGTASNIKSRVNRQSVLSAITSTQQRLKLYNKVPPNGLVVYCGEILTSEGKE 108          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.942e-29
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            RGNGTSMISLI+PP+DQV+R+ +ML +E+GTASNIKSRVNR SVLGAITS Q RLKL NKVPPNGLV+Y GTI TD+GKE
Sbjct:   36 RGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKSRVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKE 115          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 6.248e-28
Identity = 65/104 (62.50%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D Q  DK                 RGNGTSMISLI+ P DQ+++V KML +E+GTASNIKSRVNR SVLGAITSAQQRLKL  KVP NGLV+Y GT+ TD+GKE
Sbjct:    6 DQQNADKQVEQWKIKKLIKNLEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGTASNIKSRVNRLSVLGAITSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKE 109          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.374e-27
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            RGNGTSMISL++ P+D++SR++KML DE+GTASNIKSRVNR SVL AITS QQRLKL N+ P NGLV+Y GT+ T+DGKE
Sbjct:   24 RGNGTSMISLVIKPKDEISRISKMLADEYGTASNIKSRVNRLSVLSAITSTQQRLKLYNRTPQNGLVVYCGTLITEDGKE 103          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 59/101 (58.42%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  146 ETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            E +KN                RGNGTSMISL++PP+  +    KML DE+GTASNIKSRVNR SVL AITS QQ+LKL N +P NGLVLY G I T+DGKE
Sbjct:    4 EVEKNIEIWKVKKLVQSLEKARGNGTSMISLVIPPKGLIPLYQKMLTDEYGTASNIKSRVNRLSVLSAITSTQQKLKLYNTLPKNGLVLYCGDIITEDGKE 104          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.923e-22
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGK 445
            GNGTSMI+LI+PP +Q+SR + ML +E+GTASNIKSRVNR SVL AITS ++RLKL NKVP NGLV+Y G +  +  K
Sbjct:   26 GNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNK 103          
The following BLAST results are available for this feature:
BLAST of FC932376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ERF1_MESAU1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME1.030e-3066.67Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN1.487e-2963.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL1.942e-2978.75Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI6.248e-2862.50Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO2.374e-2772.50Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST3.209e-2458.42Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO3.923e-2265.38Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34207H12EF PostHarveN Citrus clementina cDNA clone C34207H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932376 ID=FC932376; Name=FC932376; organism=Citrus clementina; type=EST; length=448bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGTAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTGACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGGTACTGATGATGGGAAGGAA
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