FC932376

Overview
NameFC932376
Unique NameFC932376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.662e-21
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGK 445
            G+GTS+ISL++PP +Q+S VT ML +E+GTASNIKSRVN+ +VL AITSA  RLKL N++PPNGL +Y G I  +DGK
Sbjct:   35 GSGTSVISLLIPPGEQLSSVTGMLTNEYGTASNIKSRVNKNAVLSAITSAMSRLKLYNRLPPNGLAVYCGEI-EEDGK 111          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            RG+GTSM+SLI+PP+ Q++  TK++ DEF  A+NIK RVNRQSV  A+ SA QRLKL  + P NGL+LY G +  ++GKE
Sbjct:   27 RGSGTSMVSLIIPPKKQINDSTKLISDEFSKATNIKDRVNRQSVQDAMVSALQRLKLYQRTPNNGLILYCGKVLNEEGKE 106          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.924e-19
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKL-DNKVPPNGLVLYTGTIGTDDG 442
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKL +N++P NGL+LY G +  ++G
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEG 104          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.924e-19
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKL-DNKVPPNGLVLYTGTIGTDDG 442
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKL +N++P NGL+LY G +  ++G
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEG 104          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.488e-18
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGK 445
            +GNGTSM+SLI+PP+D +++  K+L  E   A NIKSR+ +QSV+ AITS +++LKL  + P NGL LY G I  +DGK
Sbjct:   32 KGNGTSMVSLIIPPKDDINKYGKLLTGEMSAAQNIKSRITKQSVVTAITSTKEKLKLYKQTPTNGLCLYCGVIYMEDGK 110          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGK 445
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKL  + P NGL +Y G I  +DGK
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGK 110          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGK 445
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKL  + P NGL +Y G I  +DGK
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGK 110          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            +G+GTSMI+LI+  +DQ++   +ML +E G ASNIKSRV RQ+V  A+TS  ++LKL NK PPNGLV++ G +  +DG E
Sbjct:   30 KGSGTSMITLIINFKDQINIHARMLAEEVGKASNIKSRVTRQNVTDALTSTLEKLKLYNKTPPNGLVIFCGLVQQEDGGE 109          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.227e-17
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            RG GTS+IS+ M P++Q+S +   L +E+GTASNIKS  N+ SV  AIT++  RLK  N++PPNGL+LY GT+ T + KE
Sbjct:   29 RGMGTSVISIYMTPKEQISGMVTKLNNEYGTASNIKSHTNKLSVQSAITASLGRLKQYNRLPPNGLLLYCGTVLTAENKE 108          
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.481e-17
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            +G+GTSMISLI+  +DQ++   KML DE G ASNIKSRV RQ+V  A+TS  ++LKL NK P NGL++Y G     D  E
Sbjct:   30 KGSGTSMISLIINYKDQINPFMKMLVDEVGKASNIKSRVTRQNVTDALTSTMEKLKLYNKTPNNGLIIYCGLASEGDSGE 109          
The following BLAST results are available for this feature:
BLAST of FC932376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ERF1_GIALA9.662e-2164.10Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TETTH4.795e-2057.50Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU6.924e-1944.66Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEAM6.924e-1944.66Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR4.488e-1853.16Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT1.705e-1751.90Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE1.705e-1751.90Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA1.705e-1753.75Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB2.227e-1753.75Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA6.481e-1755.00Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34207H12EF PostHarveN Citrus clementina cDNA clone C34207H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932376 ID=FC932376; Name=FC932376; organism=Citrus clementina; type=EST; length=448bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGTAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTGACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGGTACTGATGATGGGAAGGAA
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