FC932377

Overview
NameFC932377
Unique NameFC932377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OBPAL_CANAL (Oxysterol-binding protein-like protein OBPalpha OS=Candida albicans GN=OBPALPHA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 56/181 (30.94%), Postives = 90/181 (49.72%), Query Frame = 3
Query:  216 LEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYI------------GADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWAL-SIYFAYRRAWKPFNPVLGETF-----EMVNHGGVTFIAEQVSHHPPMSAGH--AENEHFIYDVDFKLRNKFLGNS 698
            L+ +  + ++ED ED++  G  K +  D+  ++  +Y             G D+ S +TLP FI E  S+L+R+    +   LL  ++  EDP  R +    W L S + + +   KP NPVLGE F     E+ N+    +++EQ+SHHPP S+       E    D     +++FLGNS
Sbjct:    7 LDKLKLKTTSEDIEDDS--GHAKPDNSDDIDEVDSEYQNILLSIIAQLRPGMDL-SKITLPTFILEKKSMLERITNFFQIPKLLIDSNSIEDPLDRFIGVLRWYLASWHISPKAVKKPLNPVLGEVFTCYWDELPNNKSAYYLSEQISHHPPKSSYFYIMPEEKIRVDGVVIPKSRFLGNS 184          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: YJX1_SCHPO (Oxysterol-binding protein homolog C23B6.01c OS=Schizosaccharomyces pombe GN=SPCC23B6.01c PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 50/140 (35.71%), Postives = 65/140 (46.43%), Query Frame = 3
Query:  345 SLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLV-----YASSWALSIYFAYRRAWKPFNPVLGETFE---------------MVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVD--FKLRNKFLGNS 698
            S VT P F+ EP S+L+R+   M +  LL    +  DP MR +     Y S W    +   R   KP NP+LGETF                   HG   + AEQV HHPP+SA       +   +D   K R++FLGNS
Sbjct:   45 SKVTFPTFVLEPKSMLERITNFMSHPDLLLNVQKTADPEMRFLDVVRFYMSGW----HIRPRGVKKPLNPILGETFTGFWKFPPSNSKDPNLQKLHGIAVYAAEQVCHHPPISAYFYLCPEYKVRIDGVVKPRSRFLGNS 180          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSH6_YEAST (Oxysterol-binding protein homolog 6 OS=Saccharomyces cerevisiae GN=OSH6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 44/123 (35.77%), Postives = 64/123 (52.03%), Query Frame = 3
Query:  351 VTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETF----EMVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKL--RNKFLGNS 698
            +TLP FI E  S+L+R+   +++   L  A   +DP  R +Y   W L+  + A +   KP NPVLGE F    ++ N     +I+EQ SHHPP  A           VD  +  +++FLGNS
Sbjct:   67 ITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIAPKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVIPKSRFLGNS 189          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSH7_YEAST (Oxysterol-binding protein homolog 7 OS=Saccharomyces cerevisiae GN=OSH7 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 57/186 (30.65%), Postives = 87/186 (46.77%), Query Frame = 3
Query:  162 TIGSAMSKSVNGLLGYEGLEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETF----EMVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKL--RNKFLGNS 698
            ++ ++   S+NG+         N + S  D +D        Q    N    ++   G D+ S +TLP FI E  S+L+R+   +++  +L  A   +D   R V   +W L+  +   R   KP NP+LGE F    ++ N     +IAEQ SHHPP SA           VD  +  ++KFLGNS
Sbjct:   11 SLTNSSHSSINGIAS----NAANSKPSGADTDDIDENDESGQSILLNIISQLKP--GCDL-SRITLPTFILEKKSMLERITNQLQFPDVLLEAHSNKDGLQRFVKVVAWYLAGWHIGPRAVKKPLNPILGEHFTAYWDLPNKQQAFYIAEQTSHHPPESAYFYMIPESNIRVDGVVVPKSKFLGNS 189          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OBPA_CANAL (Oxysterol-binding protein-like protein OBPa OS=Candida albicans GN=OBPA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 47/126 (37.30%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  345 SLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWAL-SIYFAYRRAWKPFNPVLGETF-----EMVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKL--RNKFLGNS 698
            S +TLP FI E  S+L+R+    +   +L  A+   D   R V   +W L S + A +   KP NPVLGETF      + +     +I+EQVSHHPP S+           VD  L  +++FLGNS
Sbjct:   63 SRITLPTFILEKKSMLERITNFFQIPDMLLKANRTSDDVERFVSVLAWYLASWHIAPKAVKKPLNPVLGETFNCYWENISDDCSAYYISEQVSHHPPKSSYFYLVPEAKIKVDGILIPKSRFLGNS 188          
The following BLAST results are available for this feature:
BLAST of FC932377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
OBPAL_CANAL2.648e-1230.94Oxysterol-binding protein-like protein OBPalpha OS... [more]
YJX1_SCHPO4.516e-1235.71Oxysterol-binding protein homolog C23B6.01c OS=Sch... [more]
OSH6_YEAST4.993e-1135.77Oxysterol-binding protein homolog 6 OS=Saccharomyc... [more]
OSH7_YEAST8.517e-1130.65Oxysterol-binding protein homolog 7 OS=Saccharomyc... [more]
OBPA_CANAL8.517e-1137.30Oxysterol-binding protein-like protein OBPa OS=Can... [more]

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Properties
Property NameValue
Genbank descriptionC34208A01EF PostHarveN Citrus clementina cDNA clone C34208A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932377 ID=FC932377; Name=FC932377; organism=Citrus clementina; type=EST; length=706bp
GAGGCGCCCCGATTAAAACGTCTCTCTCTCTATTCTTTCTAAGCTACGTA
TTCATTCGATAGCTGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACAT
GACTTCCGATGGATCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCG
CCGGTTGGTCGACTATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTA
TTGGGCTATGAAGGGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGA
TGCTGAAGATGAAGCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACA
ATTACTGGAAGATGATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTG
GTGACTCTTCCTGTATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAAT
GGCAGAGTTGATGGAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCG
AGGATCCATACATGAGATTGGTATATGCTTCATCATGGGCTTTATCAATC
TACTTTGCCTATCGACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGA
AACTTTTGAAATGGTTAATCATGGTGGTGTTACATTTATAGCTGAACAAG
TTAGTCATCACCCCCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTC
ATTTATGATGTNGACTTCAAGTTGAGAAACAAATTTTTAGGAAACTCGAT
TGATGT
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