FC932385

Overview
NameFC932385
Unique NameFC932385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.404e-42
Identity = 87/236 (36.86%), Postives = 146/236 (61.86%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI---EPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +++++ + +NG+A EA ++F +M     +  P+S T VS+            G  +H  I+  GLD  + + +AL+ +Y+RCG +   + VFD M + +V +W ++IS+YG HGYG +A+++F +M    G  P+ ++FV+VL AC+HAGLVEEG+ +++ M K + + P VEH+ CMVD+LGRA  L+EA K I  L        P +W ++LG+C++H N +L    +K  ++L
Sbjct:  177 NSLVSGFEQNGLADEAIQVFYQMRESGFE--PDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIAL 410          

HSP 2 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 54/192 (28.12%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   81 MESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            M S ++ P++ T  SV            GK +H   +  G      V +ALVT Y++CG +E  + VFD M ++ +V+WNSL+S +  +G   +AIQ+F +M   G  P   +FVS+L AC+  G V  G  + + +  E +   +V+    +++L  R   + +A ++ + ++ E     W +++ +   H
Sbjct:   98 MLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGL-DLNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTH 287          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.446e-42
Identity = 92/234 (39.32%), Postives = 136/234 (58.12%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSI-LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSLS 707
            + MI  Y+++G A +A EL  EM  E     PN+ T+               GK IH   LR   +++ L V + L+ MYA+CG +   + VFD+M  ++ V+W SL++ YG+HGYG +A+ IF EM   G     ++ + VL ACSH+G++++G   F  M+    V P  EHYAC+VDLLGRA +L  A ++IE++ +EP P VW + L  CRIH  VEL E A++    L+
Sbjct:  444 TVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELA 677          

HSP 2 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 59/227 (25.99%), Postives = 105/227 (46.26%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLD-------SILPVVSALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV--SVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            SA I+ YA+ G+ +EA  + R+M+  S  + PN VT++SV            GK IH   ++  +D           V++ L+ MYA+C K++  + +FD +   +RDVV+W  +I  Y  HG   KA+++  EM        P +F     L AC+    +  GK +     +       +    C++D+  +   + + A+++ D  +      W SL+    +H
Sbjct:  334 SAAISGYAQRGLGYEALGVCRQML--SSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISD-ARLVFDNMMAKNEVTWTSLMTGYGMH 557          

HSP 3 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/201 (30.35%), Postives = 94/201 (46.77%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE 608
            +++I  Y  NG A +   LF   +M S    P++ T   V            G+  H   L  G  S + V +ALV MY+RC  L   + VFD M   DVVSWNS+I SY   G    A+++F  M    G  P  I+ V+VL  C+  G    GK L        M++ ++    C+VD+  +   ++EA  +  ++ ++
Sbjct:   96 NSLIRSYGDNGCANKCLYLFG--LMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTVFSNMSVK 293          

HSP 4 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 49/190 (25.79%), Postives = 84/190 (44.21%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL-----------------------------------ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 473
            +++I  YA+ G    A E+F  M  E     P+++T+V+V            GK +H   +   +   + V + LV MYA+CG ++    VF +M  +DVVSWN++                                   IS Y   G G +A+ + ++M+  G+ P+ ++ +SVL  C+  G +  GK
Sbjct:  197 NSIIESYAKLGKPKVALEMFSRMTNE-FGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP197_ARATH (Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.446e-42
Identity = 89/232 (38.36%), Postives = 141/232 (60.78%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            ++MI+CY+RN +   + +LF  M+  S  + P+SV++ SV           +GK +HG  LR G+ S   + +AL+ MY +CG  +  + +F  M  + +++WN +I  YG HG    A+ +F EM   G SP  ++F+S++ AC+H+G VEEGK +FE M++++ + P++EHYA MVDLLGRA  LEEA   I+ + IE    +W  LL + R H NVEL   +++  L +
Sbjct:  546 NSMISCYSRNNLPELSIDLFNLML--SQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRM 775          

HSP 2 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 64/215 (29.77%), Postives = 106/215 (49.30%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS--FVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 647
            +AM+A YA N   + A +LF  M  +S  + P+S T+ +V            GK +H  + +R + S   + SAL+T+Y++CG       VF  M+++D+V+W SLIS    +G   +A+++F +M     S  P S    SV  AC+    +  G  +  SM K  +V  +V   + ++DL  +    E A K+   +  E     W S++ SC
Sbjct:  342 NAMVAAYAENDYGYSALDLFGFMRQKS--VLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVL-NVFVGSSLIDLYSKCGLPEMALKVFTSMSTE-NMVAWNSMI-SC 551          

HSP 3 Score: 82.8037 bits (203), Expect = 2.080e-15
Identity = 49/156 (31.41%), Postives = 81/156 (51.92%), Query Frame = 3
Query:   12 AMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 479
            ++I+   +NG   EA ++F +M  +   L P+S  M SV            G  +HG +++ GL   + V S+L+ +Y++CG  E+   VF  M   ++V+WNS+IS Y  +     +I +F  M+  G+ P  +S  SVL A S    + +GK L
Sbjct:  444 SLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSL 599          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.446e-42
Identity = 92/233 (39.48%), Postives = 137/233 (58.80%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXE-QGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            SAM+A YA+ G    A ++F E+      + PN  T  S+            QGK  HG  ++  LDS L V SAL+TMYA+ G +E  + VF    ++D+VSWNS+IS Y  HG   KA+ +FKEM    V    ++F+ V  AC+HAGLVEEG+  F+ M ++  + P+ EH +CMVDL  RA +LE+A K+IE++    G  +W ++L +CR+H   EL   A++  +++
Sbjct:  463 SAMLAGYAQTGETEAAIKMFGELTKGG--IKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAM 693          

HSP 2 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 53/178 (29.78%), Postives = 90/178 (50.56%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS-----------HAGLVEEGKMLFESMRKEHMV 509
            + +I+ YARN M  E   LF  M M++    PNS T  +            +G  +H  +++ GLD  +PV ++L+ +Y +CG +   + +FD  + + VV+WNS+IS Y  +G   +A+ +F  M  + V  S  SF SV+  C+           H  +V+ G +  +++R   MV
Sbjct:  163 TTLISGYARNSMNDEVLTLF--MRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338          

HSP 3 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 51/217 (23.50%), Postives = 101/217 (46.54%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL-VEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            +AMI+ + +N    EA +LF EM  +   + PN  T   +          E    +H  +++   +    V +AL+  Y + GK+E    VF  +D +D+V+W+++++ Y   G    AI++F E+   G+ P+  +F S+L  C+     + +GK  F     +  +  S+   + ++ +  +   +E A ++ +  R E     W S++     H
Sbjct:  366 TAMISGFLQNDGKEEAVDLFSEM--KRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQ-FHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQH 574          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.446e-42
Identity = 86/222 (38.74%), Postives = 133/222 (59.91%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 674
            +AMI+ Y   G   EA + FREM +   +  P+ ++++SV          E GK IH    RRG      V +AL+ MY++CG +     +F  M+ +DV+SW+++IS Y  HG    AI+ F EM    V P+ I+F+ +L ACSH G+ +EG   F+ MR+++ + P +EHY C++D+L RA KLE A +I + + ++P  K+WGSLL SCR   N+++A
Sbjct:  210 TAMISGYTGIGCYVEAMDFFREMQLAGIE--PDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVA 429          

HSP 2 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 50/188 (26.60%), Postives = 85/188 (45.21%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG--------------------------VHGYGG-----KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 479
            +++I  Y  N +  +   ++++++ +S +L P+  T   +            GK +HG + + G    +   +AL+ MY +   L     VFD M +RDV+SWNSL+S Y                           + GY G     +A+  F+EM   G+ P  IS +SVL +C+  G +E GK +
Sbjct:   77 NSIIRAYTHNSLYCDVIRIYKQLLRKSFEL-PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWI 263          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.807e-42
Identity = 88/232 (37.93%), Postives = 143/232 (61.64%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            ++MI+  A NG   EA ELFR M+     L  +SV ++ +           +G+ IH  +LR+G      +  A+V MYA CG L+  + VFD ++++ ++ + S+I++YG+HG G  A+++F +M +  VSP  ISF+++L ACSHAGL++EG+   + M  E+ + P  EHY C+VD+LGRAN + EA + ++ ++ EP  +VW +LL +CR H   E+ E A++  L L
Sbjct:  556 TSMISSSALNGNESEAVELFRRMVETG--LSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLEL 785          

HSP 2 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSI-LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 440
            +++++ Y+ +G + E  ELFREM M      PNS T+VS           + GK IH  +L+    S  L V +AL+ MY RCGK+   + +   M+  DVV+WNSLI  Y  +    +A++ F +MI  G     +S  S++ A
Sbjct:  253 NSILSSYSTSGKSLETLELFREMHMTGP--APNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395          

HSP 3 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 60/213 (28.17%), Postives = 99/213 (46.48%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFD-HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYAC--MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 638
            + MI  Y  NG    A  L+  M +E   L  +S    ++            G  +H  +++ G  S   +V+ALV+MYA+   L   + +FD   +K D V WNS++SSY   G   + +++F+EM   G +P+  + VS L AC      + GK +  S+ K      S E Y C  ++ +  R  K+ +A +I+  +        W SL+
Sbjct:  151 NTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFP--ALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS--THSSELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358          

HSP 4 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 60/223 (26.91%), Postives = 113/223 (50.67%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGL-DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF-ESMRKEHMVRPS-----VEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            + +IA YA+N    EA ELFR++  +  ++  + + + S+             K IH  ILR+GL D+++   + LV +Y +C  +     VF+ +  +DVVSW S+ISS  ++G   +A+++F+ M+  G+S   ++ + +L A +    + +G+ +    +RK   +  S     V+ YAC  DL        ++AK + D     G   + S++ +  +H
Sbjct:  456 TTVIAGYAQNDCHVEALELFRDVAKKRMEI--DEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQ--NELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL--------QSAKAVFDRIERKGLLQYTSMINAYGMH 666          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.807e-42
Identity = 82/204 (40.20%), Postives = 135/204 (66.18%), Query Frame = 3
Query:   96 LCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            L PNS+T++++           +GK IH   ++  L + + V SALV MYA+CG L++ + VFD + +++V++WN +I +YG+HG G +AI + + M+  GV P+ ++F+SV  ACSH+G+V+EG  +F  M+ ++ V PS +HYAC+VDLLGRA +++EA +++  + R       W SLLG+ RIH N+E+ E A++  + L
Sbjct:  513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQL 716          

HSP 2 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 61/229 (26.64%), Postives = 113/229 (49.34%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM------IYHGVS-----PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCN 662
            +AMIA Y++N    EA  LF  M  ES  L  NS TM  V           + + IHG +++RGLD    V + L+ MY+R GK+++   +F  M+ RD+V+WN++I+ Y    +   A+ +  +M      +  G S     P+ I+ +++L +C+    + +GK +     K ++    V   + +VD+  +   L+ + K+ + +  +     W  ++ +  +H N
Sbjct:  373 NAMIAGYSQNEHDKEALLLFIGM-EESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLA-TDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598          

HSP 3 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   54 ASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXE---QGKMIHGCILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 479
            A E FR M+ E+ +  P+S T+VSV          E    GK +H   LR+G L+S   +++ LV MY + GKL   + +      RD+V+WN+++SS   +    +A++  +EM+  GV P   +  SVL ACSH  ++  GK L
Sbjct:  183 ALEAFRCMLDENVE--PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324          

HSP 4 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 52/187 (27.81%), Postives = 90/187 (48.13%), Query Frame = 3
Query:   57 SELFREMIMESHDLC-----PNSVTMVSVXXXXXXXXXXEQGKMIHGCILR--RGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYA--CMVDLLGRANKLEEAAKII 590
            S L RE ++   D+      P++    ++          E GK IH  + +   G+DS+  V + LV +Y +CG       VFD + +R+ VSWNSLISS         A++ F+ M+   V PS  + VSV+ ACS+  +  EG M+ + +    + +  +  +    +V + G+  KL  +  ++
Sbjct:   75 SNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVT-VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLL 259          

HSP 5 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 53/195 (27.18%), Postives = 90/195 (46.15%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKI 587
            + +++   +N    EA E  REM++E  +  P+  T+ SV            GK +H   L+ G LD    V SALV MY  C ++  G+ VFD M  R +  WN++I+ Y  + +  +A+ +F  M    G+  +  +   V+ AC  +G     + +   + K  + R        M D+  R  K++ A +I
Sbjct:  271 NTVLSSLCQNEQLLEALEYLREMVLEGVE--PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRI 462          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.584e-42
Identity = 85/233 (36.48%), Postives = 142/233 (60.94%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            + +I+ +++NG   EA ++F  M  +   + PN +T+VSV          E G+ + G     G    + V +A + MY++CG +++ + +F+ + ++R++ SWNS+I S   HG   +A+ +F +M+  G  P  ++FV +L AC H G+V +G+ LF+SM + H + P +EHY CM+DLLGR  KL+EA  +I+ + ++P   VWG+LLG+C  H NVE+AE AS+    L
Sbjct:  183 TTVISGFSQNGNYSEALKMFLCMEKDK-SVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKL 414          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.294e-41
Identity = 80/232 (34.48%), Postives = 140/232 (60.34%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            + MI  + +NG+A +    F       H+  P+  T ++V             + IHG I+  G      + +AL+ +Y++ G+LE    VF  +   D ++W +++++Y  HG+G  AI+ F+ M+++G+SP  ++F  +L ACSH+GLVEEGK  FE+M K + + P ++HY+CMVDLLGR+  L++A  +I+++ +EP   VWG+LLG+CR++ + +L  +A++    L
Sbjct:  204 NTMIVIHLQNGLAEKGLAYFNMSRRVGHE--PDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFEL 433          

HSP 2 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 49/221 (22.17%), Postives = 102/221 (46.15%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE-----EGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            +++I+ Y+  G   +  E+   M++      PN VT +S+          E+G+ IHG +++ G+   + VV+A +  Y + G L     +F+ +  +++VSWN++I  +  +G   K +  F      G  P   +F++VL +C   G+V       G ++F        +         ++DL  +  +LE+++ +  ++   P    W ++L +   H
Sbjct:  101 NSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCIT------TALLDLYSKLGRLEDSSTVFHEI-TSPDSMAWTAMLAAYATH 314          

HSP 3 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 50/152 (32.89%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  231 LVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH--GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 680
            LV  Y R G     + +FD M +RD+VSWNSLIS Y   GY GK  ++   M+    G  P+ ++F+S++ AC + G  EEG+ +   + K   V   V+     ++  G+   L  + K+ EDL I+     W +++    IH    LAE+
Sbjct:   72 LVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMK-FGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIK-NLVSWNTMI---VIHLQNGLAEK 218          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.689e-41
Identity = 77/204 (37.75%), Postives = 126/204 (61.76%), Query Frame = 3
Query:   93 DLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +L  ++ T  S+           +G+ IH  +++ GL    PV +AL++MY++CG ++    VF+ M+ R+V+SW S+I+ +  HG+  + ++ F +MI  GV P+ +++V++L ACSH GLV EG   F SM ++H ++P +EHYACMVDLL RA  L +A + I  +  +    VW + LG+CR+H N EL + A++  L L
Sbjct:  469 ELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL 672          

HSP 2 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 45/185 (24.32%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  105 NSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM---DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRA-NKLEEAAKIIEDLRIEPGPKVWGSLLGSC 647
            +SVT  S+            GK++H  ++   ++    + ++L+++Y++ G     + VF+ M    KRDVVSW+++++ YG +G    AI++F E +  G+ P+   + +V+ ACS++  V  G++    + K       V     ++D+  +  N  E A K+ + +  E     W  ++  C
Sbjct:   61 DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS-ELNVVTWTLMITRC 244          
The following BLAST results are available for this feature:
BLAST of FC932385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
PP182_ARATH3.404e-4236.86Pentatricopeptide repeat-containing protein At2g33... [more]
PP390_ARATH4.446e-4239.32Pentatricopeptide repeat-containing protein At5g16... [more]
PP197_ARATH4.446e-4238.36Pentatricopeptide repeat-containing protein At2g40... [more]
PP172_ARATH4.446e-4239.48Pentatricopeptide repeat-containing protein At2g27... [more]
PP165_ARATH4.446e-4238.74Pentatricopeptide repeat-containing protein At2g20... [more]
PP296_ARATH5.807e-4237.93Pentatricopeptide repeat-containing protein At3g63... [more]
PP285_ARATH5.807e-4240.20Pentatricopeptide repeat-containing protein At3g57... [more]
PP371_ARATH7.584e-4236.48Pentatricopeptide repeat-containing protein At5g08... [more]
PP411_ARATH1.294e-4134.48Pentatricopeptide repeat-containing protein At5g40... [more]
PP272_ARATH1.689e-4137.75Pentatricopeptide repeat-containing protein At3g49... [more]

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Properties
Property NameValue
Genbank descriptionC34208A09EF PostHarveN Citrus clementina cDNA clone C34208A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932385 ID=FC932385; Name=FC932385; organism=Citrus clementina; type=EST; length=733bp
GGCCGGGGAGTGCTATGATTGCTTGTTATGCTAGAAATGGGATGGCTTTT
GAGGCGTCGGAGCTTTTTCGTGAAATGATAATGGAGTCTCACGATTTATG
TCCGAATTCAGTGACTATGGTTAGTGTGCTTCAAGCTTGCGCGGCTCTTG
CTGCTTTAGAACAAGGGAAGATGATACATGGGTGCATATTAAGGAGGGGT
CTTGATTCTATTTTGCCTGTTGTAAGTGCATTGGTGACAATGTATGCGAG
ATGTGGAAAGCTTGAATTAGGTCAATGTGTTTTTGATCATATGGATAAGA
GGGATGTCGTTTCTTGGAATTCTTTAATTTCAAGCTATGGGGTTCATGGA
TATGGAGGGAAAGCAATTCAAATTTTTAAAGAGATGATTTATCATGGAGT
TTCACCGAGTCCTATATCTTTTGTTAGTGTTTTGGGAGCTTGCAGTCATG
CAGGGCTTGTTGAGGAGGGGAAGATGTTATTTGAATCTATGCGTAAAGAG
CATATGGTACGTCCTAGCGTGGAGCATTATGCTTGTATGGTAGATCTTCT
TGGTCGTGCTAATAAGTTAGAAGAAGCAGCCAAGATTATAGAAGATTTGA
GAATTGAACCGGGACCTAAGGTTTGGGGTTCATTGCTTGGATCGTGTCGG
ATTCATTGTAATGTTGAGCTTGCTGAGAGAGCAAGCAAAGGCTTTTTGAG
CTTGAGCCTACAATGCAGGGAATTATGTACTTC
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